Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1540 ATGGATGCTCTTCTTCTTCCCTGGGATACTTCTGAATTTGTCTCCAATATGCCTATCTTGTGTAACACTCAACAACTAGCCATTGAAGAGGAATTAGCCGCAGGCTACTCCATGCCTAACTTATTGGTTTATCATCACACAGCTCAAACAGATCATCTTTGTTCAGCTTTTGATCTTGTGCCAGAATATTATTTTGACACCGATATGGCCAATGACCAGCAACAACAACTCATCAGCAATGGAGATAACGACGGGAAGATTTCCATGATTCTATCTGATAGATATAGAGGAAACATAAAGAGCTTCAACAACAACTTGAGTTCAGTTTCCTCGTGTGATGAATCTCACAAGAACAAGAACAAGAACGACGTCGTTCAGTGTCGCGTCAATGAAACAGAAGACACCATCTCTAAGAGACCTTCATCACTTCAAGGCAATATTTCAGAACATAATAAGACTAATCATGCAAAAAGGAGGTTCAAGCTCATTTCAGAGAATCACAAAAAAGCACCAAAACCCAAGAAAACAAGATGGGATAATCAGAAATTGTCATCATCATCATCATCTTCTTCTTCAAACATAAATTTTCAGCAGCCAAACTCAAGCATATCATTTAATTCAAGCATTAGTCATGAGCCGGATCAAGAGGCCATAGCACAAATGAAGGAGATGATATATAGGGCTGCAGCTTTCAGGCCTGTGAACTTAGGTTCGGAGGTAGTGGAAAAGCCTAGAAGGAAGAATGTGAGAATATCATCAGATCCACAGACTGTAGCAGCGAGACAAAGGAGAGAGAGAATAAGTGAGAGAATTAGGGTTTTGCAGAAGATAGTGCCTGGTGGAAGCAAGATGGACACAGCTTCAACTCTTGATGAAGCTGCAAATTATCTCAAGTTTCTCAGGTCACAGGTCAAAGCATTGGAAAATCTAGGGGACGAGGTTCATTATTATTCTATGAACTATAGTAGTACTCCTTTCTCTTCTGCTAACCCTAGTAATCATTATTATAACTTTCAGCAATATTATTCCACCCGTTGA 1038 0.3969 MDALLLPWDTSEFVSNMPILCNTQQLAIEEELAAGYSMPNLLVYHHTAQTDHLCSAFDLVPEYYFDTDMANDQQQQLISNGDNDGKISMILSDRYRGNIKSFNNNLSSVSSCDESHKNKNKNDVVQCRVNETEDTISKRPSSLQGNISEHNKTNHAKRRFKLISENHKKAPKPKKTRWDNQKLSSSSSSSSSNINFQQPNSSISFNSSISHEPDQEAIAQMKEMIYRAAAFRPVNLGSEVVEKPRRKNVRISSDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASTLDEAANYLKFLRSQVKALENLGDEVHYYSMNYSSTPFSSANPSNHYYNFQQYYSTR 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1540 345 MobiDBLite consensus disorder prediction 136 150 - -
Acco09g1540 345 Coils Coil 290 310 - -
Acco09g1540 345 Gene3D - 256 318 IPR036638 GO:0046983
Acco09g1540 345 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 85 333 IPR045843 GO:0003700|GO:0006355
Acco09g1540 345 MobiDBLite consensus disorder prediction 154 175 - -
Acco09g1540 345 MobiDBLite consensus disorder prediction 131 209 - -
Acco09g1540 345 SMART finulus 257 306 IPR011598 GO:0046983
Acco09g1540 345 MobiDBLite consensus disorder prediction 180 209 - -
Acco09g1540 345 Pfam Helix-loop-helix DNA-binding domain 261 300 IPR011598 GO:0046983
Acco09g1540 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 251 300 IPR011598 GO:0046983
Acco09g1540 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 257 314 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1540 Acco-ChrAcco09 31531907 31532944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1540 150 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 60.894 4.45e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco09g1540 HLH 1.6e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco09g1540 09 31531907 31532944 Acco07g0509 07 6045796 6047130 CCT
Acco09g1540 09 31531907 31532944 Acco09g1540 09 31531907 31532944 ECH