LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco09g1524	ATGAGGAAGAGCACACCACTTTGGATTCTGGCTTTCGATGTGTTCGTTTCACTCCTTGTGGTTAGCTACTCTATTGTTCAGGTTGTTGCAGACGAAGTTGGAAATGCAGAGGGGATAAGTATTGATTGTGGAGTAACCCATCCAACTTGGGACAGTAATAAGTTTTATTACGAGGCAGATGATCAAAATGTTGTGGAATCGGGTGAAATACATAATGTAAGTTCTGAATACACCCTTGACAGTGAACAAGAACAGGTGTGGCAGCAGTACGCAGATGATATCTACGGTAGGTCATGGTACCTCGATAGAATGATCAAAAACTCAGAGCCGATGAGTACATCAGTTGCAATTAATGGTGATACGTCAGACTATCAATTACCGAAAGAAGTGTTGAGCACTGCAATTCAGCCACGGAATGGTTCGTGGTCTTTAGTTATCCCCTGGTCAAACGAGACAGATTACGAGTATTATATATACCTTCATTTCTTTGACTTCGAAGAGCGGTTTGATCAAGATCAGCGAAGAAAGATGACAGTTACTTTCACGGATACGATCCAAGAGCCCATAACTCTTCGTTACCAGGTGCTCGAAACCATGTTTAAGACAATTCCTAAAGGGCAATGTCTGAATAACATTACAATCACATCCATCCCACATTCTGCTTTACCACCCATGATCAATGCTCTTGAGATCTATAGAGTGGTGCCCCAACCGAATTCACCAACTTGTGAAGGGGATGGCAAGTATTACTCTGAAATGATGCTTATACATGAAATGACAGCCGATGCTATGCGGATTGTAAAACATGCATATAACATCACCAGAAATTGGCAAGGAGATCCCTGCATGCCAAGCAGTTATAGGTGGGAAGGTCTGACTTGTAGTTACCTTGACAACATTCCAAGGATCACTTCATTTAATTTGTCAGGGAACAATCTAACTGGTTCAATTCCAAAGGCTCTAAGGGAGAAGAACGGCACTTCTTTGATATTGAGTTTGGACGGAAATCCCGGTCTCTGTCAGACAGGCTCCTGCAAAACCATAACAAAAAAGTTCATAAAATTACTTGTTGCAACCGTGGCTTCTGTGGTGGTTCTTGCAATAATAGTCACCATTTCTTTGATTCTCTGCAGAAAGAAAAGAAAACATCATAGTGATATGAAAGCGTTGTTGTCCAAGAAAAATGATCAGCTTAAATCAAAGAATCATGAATTTTCTCAAAATGAAGTTCATGGTATTACCAATGACTTTGCAACTGAAATTGGAGGAGGGGGATTTGGAAAAGTTTACCTTGGAAGACTAAAAGATGGCACGAAAGTTGCAGTCAAGTTACTTTCTCATTCATCACAGCAAGGGTTGAATGAATTTCAATCAGAGGCAAAATTATTATCACTCATTTATCACAGAAATCTTGTTTCTCTTGTTGGCTATTGTGATGATGGGGACATGAGAGCTCTGATTTATGAGTACATGGCAAAGGGAAATCTCCAGCACCTATTGTCAGATAAGAACCCAGATATTTTGAAGTGGAATGAGAGACTTCAAATTGCATCGGATTCAGCATGTGGATTGGACTATCTACATAATGGCTGTAAGCCGCCAATAATTCACAGAGACATAAAGTCTTCAAACATCTTGCTAAGTGAAAACATGCAAGCCAAGATTGCTGATTTGGGACTGTCTAAAGTTTTTGCCAATGATACTGACACTCATATTTCAACTCGTCCTGCAGGCACATATGGTTACCTTGACCCCGAGTTCCATAGATCTGGAAACTTGAACAAGAAAAGCGATGTTTATAGTTTTGGCATAGTCCTGCTTGAGCTAATTACTGGACAGCGAGCAATAACCGAAACATCTGATGAAGGCAAACGTCACATAGCTGATTGGGTAAATCCAAAGCTTGAGATTGGGGATATCCAAGCCATTGCAGATCCAAGATTAGAAGGAAAATTCAGTAGTGCTTCGGCATGGAAGTTTCTAGAGATAGCCATGTCTTGCGTTACACCAACAGCAATCGAAAGACCTGATATAAGTTCTGTTGTAATTGACCTAAGGCAATGTTTGGCTATGGAAACATCACTTCATGAAAGTGGAGAAAGCGCTGCATTGGAAACAAGTTATTCTCTATCAGGATCATACTCACCTCCTTCTGCTAGGTAG	2163	0.4064	MRKSTPLWILAFDVFVSLLVVSYSIVQVVADEVGNAEGISIDCGVTHPTWDSNKFYYEADDQNVVESGEIHNVSSEYTLDSEQEQVWQQYADDIYGRSWYLDRMIKNSEPMSTSVAINGDTSDYQLPKEVLSTAIQPRNGSWSLVIPWSNETDYEYYIYLHFFDFEERFDQDQRRKMTVTFTDTIQEPITLRYQVLETMFKTIPKGQCLNNITITSIPHSALPPMINALEIYRVVPQPNSPTCEGDGKYYSEMMLIHEMTADAMRIVKHAYNITRNWQGDPCMPSSYRWEGLTCSYLDNIPRITSFNLSGNNLTGSIPKALREKNGTSLILSLDGNPGLCQTGSCKTITKKFIKLLVATVASVVVLAIIVTISLILCRKKRKHHSDMKALLSKKNDQLKSKNHEFSQNEVHGITNDFATEIGGGGFGKVYLGRLKDGTKVAVKLLSHSSQQGLNEFQSEAKLLSLIYHRNLVSLVGYCDDGDMRALIYEYMAKGNLQHLLSDKNPDILKWNERLQIASDSACGLDYLHNGCKPPIIHRDIKSSNILLSENMQAKIADLGLSKVFANDTDTHISTRPAGTYGYLDPEFHRSGNLNKKSDVYSFGIVLLELITGQRAITETSDEGKRHIADWVNPKLEIGDIQAIADPRLEGKFSSASAWKFLEIAMSCVTPTAIERPDISSVVIDLRQCLAMETSLHESGESAALETSYSLSGSYSPPSAR	720

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco09g1524	720	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	491	698	-	-
	Acco09g1524	720	FunFam	receptor-like protein kinase FERONIA	379	490	-	-
	Acco09g1524	720	CDD	STKc_IRAK	421	682	-	-
	Acco09g1524	720	ProSitePatterns	Protein kinases ATP-binding region signature.	421	443	IPR017441	GO:0005524
	Acco09g1524	720	SMART	serkin_6	415	689	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco09g1524	720	Gene3D	Phosphorylase Kinase; domain 1	388	490	-	-
	Acco09g1524	720	Pfam	Malectin-like domain	88	234	IPR024788	-
	Acco09g1524	720	ProSiteProfiles	Protein kinase domain profile.	415	689	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco09g1524	720	PANTHER	OS07G0107800 PROTEIN-RELATED	74	689	-	-
	Acco09g1524	720	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	535	547	IPR008271	GO:0004672\|GO:0006468
	Acco09g1524	720	SUPERFAMILY	Protein kinase-like (PK-like)	402	685	IPR011009	-
	Acco09g1524	720	Gene3D	Transferase(Phosphotransferase) domain 1	491	706	-	-
	Acco09g1524	720	Gene3D	Ribonuclease Inhibitor	261	337	IPR032675	-
	Acco09g1524	720	Pfam	Protein tyrosine and serine/threonine kinase	418	622	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco09g1524	Acco-ChrAcco09	31319018	31326965	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco09g1524	41	713	Receptor kinase-like Gene Family	AT2G28970	37.366	2.29e-145	441

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Acco09g1524		PK_Tyr_Ser-Thr	2.1e-46	CL0016