Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1477 ATGTTAATGGAACTACCCGAGTGTTTTGTCGGTGACTATTTCTCAGCTGGAGGAGATCAATTCTCGTCGGAGAAGCCTGGTGAGTCCTTCACCATTGACGACCTCCTTGACTTCTCCAACGCCGACGCTATGATCATGTCCAACGGTTTCTTCGATAATGCCGCTGGAAACTCCACCGACTCATCCACTGTCACTGCCATTGACAGCTGTAATTTTTCCGTTTCCGGCGGTGACAATCATTTCTCCTCCGGTTACTCTGGCTCCCGCGGCTTCGGTGATCCTCAATTATCTGGAGAACTCTGCGTTCCGTATGATGACATGGTTGACCTGGAATGGCTATCGAACTTCGTGGAAGACTCATTTTCGGTCGAAGATGAGCTAAAAACACTCCACCTCCTCTCCGGCACCACTGCTTCGGCCATCGGAACGAAACCTCAGACACCGGAGTCCTCCTCGTCCTCCGAAACACTTCCACCCTTCCCCGCCGACACCGGTCGAAACGCGCCGATCTTCCATCCAGAAACTCCGCTTCCAGGTAAAGCTCGGAGCAAGCGTAACCGCGCTGCCCCAGGGGATTGGTCTACGCGCCTCCTCAACCTGATCACACCGATGGTAGTTTCAGAACCGGCGCAAGCGAAGCCGGTGGCGGCGAAGAAAAGAGATAGCTCGAATTCGGAGTTTTCTTCGGGTCGGAAATGCATGCATTGCGCCTCCGAGAAGACTCCACAATGGCGGACAGGACCAATGGGTCCGAAGACTCTCTGCAATGCTTGTGGAGTCCGGTACAAGTCCGGGAGGCTGGTGCCGGAGTACCGACCGGCTGCGAGCCCGACTTTTGTGTCGTCAAAACACTCCAATTCGCACAGGAAGGTAATCGAGATGAGGAGGCAGAAGGAATTGCAGAGGCAGCAACAGCATCAATTGGTTAGCCAGAGTTCGATTTTCGGCGTTTCTCATGGAGGAGATGATGAGTTCATGATCCCTCATACCAGTGGTCCAGATTATAGGCACATGATCCAGTAA 1023 0.5337 MLMELPECFVGDYFSAGGDQFSSEKPGESFTIDDLLDFSNADAMIMSNGFFDNAAGNSTDSSTVTAIDSCNFSVSGGDNHFSSGYSGSRGFGDPQLSGELCVPYDDMVDLEWLSNFVEDSFSVEDELKTLHLLSGTTASAIGTKPQTPESSSSSETLPPFPADTGRNAPIFHPETPLPGKARSKRNRAAPGDWSTRLLNLITPMVVSEPAQAKPVAAKKRDSSNSEFSSGRKCMHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSSKHSNSHRKVIEMRRQKELQRQQQHQLVSQSSIFGVSHGGDDEFMIPHTSGPDYRHMIQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1477 340 FunFam GATA transcription factor 222 308 - -
Acco09g1477 340 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 230 290 - -
Acco09g1477 340 PIRSF Txn_fac_GATA_plant 16 319 IPR016679 GO:0003677|GO:0005634|GO:0045893
Acco09g1477 340 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
Acco09g1477 340 Gene3D - 223 307 IPR013088 GO:0006355|GO:0008270
Acco09g1477 340 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
Acco09g1477 340 CDD ZnF_GATA 232 279 IPR000679 GO:0006355|GO:0043565
Acco09g1477 340 PANTHER GATA TRANSCRIPTION FACTOR 26 305 - -
Acco09g1477 340 SMART GATA_3 227 277 IPR000679 GO:0006355|GO:0043565
Acco09g1477 340 MobiDBLite consensus disorder prediction 210 230 - -
Acco09g1477 340 MobiDBLite consensus disorder prediction 139 190 - -
Acco09g1477 340 Pfam GATA zinc finger 233 266 IPR000679 GO:0006355|GO:0043565
Acco09g1477 340 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1477 Acco-ChrAcco09 30485186 30486370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1477 28 339 C2C2-Gata Transcription Factor Family AT4G32890 45.455 3.42e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco09g1477 GATA 1.7e-14 CL0167