Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1461 ATGTCTAGGCTACTTGAACGTGATTACATAGGCTTAGCAGAGAAGCCTTCCATGGAAATCTCTGAAAAAAGCTCACATCTCAACTTGAACTTGAAGGAGACAGAACTCAGACTTGGGCTTCCTGGTTCTGAATCTCCAGAGAGAAAACCAACAAACATAATATCTCTGTTTGGCAAGGATTTGCAGAATACAAATGCCTTGAAGAACCTTGTTGCTGGCTCTAAGAGAGGCTTCTCTGATGATACCATTATTGATTTTGAGGGCGAAAGAAATAATAACCACAAGGCTTCTCAATCTGCCAAACCAAAACAGGACAAGAAGCCAGAGATTTCTGAAACAAACGAGCATGCTAGTCCTCCTTCAAAGGCACAGGTTGTGGGGTGGCCACCGATTCGATCCTTTCGGAGGAACACGATGGCCTGTAGCTTGACAAAGAACAAGGACGACGATGAAGGAGAAGAGGGGAAACCATCAGAAGCAAGTGGTTGTCTTTATGTAAAAGTTAGTATGGATGGTGCTCCATATCTCAGAAAGGTTGATCTCAGAATGTACACCAACTATATGCAACTTTCTTCAGCTCTTGAGCAAATGTTCACTTGCTTCACCATTGGTGAATGCAATTCTGGTGGGTTTCCCGGGAAAGATGGTATGAGTGAGAGCTCTTTGAGGGATCTTCTTCATGTGTCTGTTCATGTTGTTACATACGAAGACAAAGATGGAGATTGGATGCTTGTTGGTGATGTCCCATGGGAGATGTTCACTGAATCATGCAGGAGACTGAGGATCATGAAAGGTTCTGAAGCAATTGGGTTAGCTCCCAGGGCCATGGAAAAGAAGTGCACGAGCCACCAAAACAATTGCAGAAGAATTAAATAG 876 0.4361 MSRLLERDYIGLAEKPSMEISEKSSHLNLNLKETELRLGLPGSESPERKPTNIISLFGKDLQNTNALKNLVAGSKRGFSDDTIIDFEGERNNNHKASQSAKPKQDKKPEISETNEHASPPSKAQVVGWPPIRSFRRNTMACSLTKNKDDDEGEEGKPSEASGCLYVKVSMDGAPYLRKVDLRMYTNYMQLSSALEQMFTCFTIGECNSGGFPGKDGMSESSLRDLLHVSVHVVTYEDKDGDWMLVGDVPWEMFTESCRRLRIMKGSEAIGLAPRAMEKKCTSHQNNCRRIK 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1461 291 MobiDBLite consensus disorder prediction 88 128 - -
Acco09g1461 291 FunFam Auxin-responsive protein 158 275 - -
Acco09g1461 291 SUPERFAMILY CAD & PB1 domains 156 264 - -
Acco09g1461 291 Pfam AUX/IAA family 33 274 IPR033389 -
Acco09g1461 291 ProSiteProfiles PB1 domain profile. 163 265 IPR000270 GO:0005515
Acco09g1461 291 MobiDBLite consensus disorder prediction 88 113 - -
Acco09g1461 291 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 29 270 IPR003311 GO:0005634|GO:0006355
Acco09g1461 291 Gene3D - 158 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1461 Acco-ChrAcco09 30347024 30348612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1461 166 268 B3 DNA Binding Superfamily AT2G46530 30.097 4.82e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco09g1461 AUX_IAA 5.4e-88 CL0072