Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1399 ATGTGGACATTAGCAATTCTCACCGTATTCGTTGCGTTTTTCTTAAACTTCATTTTCCGTCACCGGCTATCAGCGACGTTCCGTGTTTCCCTTTACGAGCAATGGGAATTAATGGCAACACGATATTCAGAAGACCTTGACGATGATTGGGAGTATTTAGACCATGCAAGGGAAGACACTAGTCAGTTGCTCAAGGAACTGAAGTTGGATGAGAAAGCAAAACAAGAACAGTGTATTGTTTGTTTGGAATTTTTTAAAGATGGTGACGATGTTGTGTCAATGCCATGCAATCATATTTATCATAACAAGTGTATTGTTGAGTGGTTTCGGAGAAGTTATATGTGTCCGTTGTGCCGTCGCAACGATTGGTTCAAGGAACAGGACAAGAGCGAAGGACAAGCATTTCCATTTGTGGCTATATAG 423 0.4113 MWTLAILTVFVAFFLNFIFRHRLSATFRVSLYEQWELMATRYSEDLDDDWEYLDHAREDTSQLLKELKLDEKAKQEQCIVCLEFFKDGDDVVSMPCNHIYHNKCIVEWFRRSYMCPLCRRNDWFKEQDKSEGQAFPFVAI 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1399 140 ProSiteProfiles Zinc finger RING-type profile. 78 119 IPR001841 -
Acco09g1399 140 Coils Coil 57 77 - -
Acco09g1399 140 CDD RING-H2_PA-TM-RING 77 119 - -
Acco09g1399 140 SUPERFAMILY RING/U-box 77 125 - -
Acco09g1399 140 SMART ring_2 78 118 IPR001841 -
Acco09g1399 140 PANTHER TARGET OF ERK KINASE MPK-1 57 121 - -
Acco09g1399 140 Pfam Ring finger domain 77 119 IPR001841 -
Acco09g1399 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 122 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1399 Acco-ChrAcco09 29459488 29459910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1399 63 119 C3H Transcription Factor Family AT4G12190 40.625 1.41e-12 57.4