Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1393 ATGGAAAGAGATGGTGGCTTGGGGCTTGAGATCACGGAGCTGAGATTGGGTCTTCCTGGGAGGGAGTTGGAGGGGAAGAAGAAGAAGAATGAGAAGAAGAGGCTGTTCTCGGAGATTGATGATGATCATGAGGAGGATGGCGGCGGTGGAGATGATCAGAACAGCTCTTCGGAGGGCGTTTGTGATGGTGGTGACCGGAAGCTGACTGCGGCGGTAGGGTGGCCGCCGGTGTGCTCGTACAGGAGGAAGAATAGCATGAACAATAATGAAGGGTCGAAAATGTACGTGAAAGTGAGCATGGATGGAGCTCCGTTCTTGCGCAAAATTGACTTGGAAAAGCTCAAAGGTTACTCTGAACTCGCTCTTGCCTTGGAAAAGCTCTTTGGTTGCTATGGAATCAAAGAGGCGTTGAAGAATGGAGACAAAAGCGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTTGTTGGAGATGTCCCTTGGGAAATGTTTAGGGAGACATGCAAGAGGTTGAGGGTAATGAAGAAATCAGAAGCAAAGGGATTTGGAGTGACACCAAAAGGGTCTCTGAAGGGATATATAGAAGGCGTCACCAACTGA 609 0.4893 MERDGGLGLEITELRLGLPGRELEGKKKKNEKKRLFSEIDDDHEEDGGGGDDQNSSSEGVCDGGDRKLTAAVGWPPVCSYRRKNSMNNNEGSKMYVKVSMDGAPFLRKIDLEKLKGYSELALALEKLFGCYGIKEALKNGDKSEHVPIYEDKDGDWMLVGDVPWEMFRETCKRLRVMKKSEAKGFGVTPKGSLKGYIEGVTN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1393 202 FunFam Auxin-responsive protein 88 189 - -
Acco09g1393 202 Pfam AUX/IAA family 30 185 IPR033389 -
Acco09g1393 202 MobiDBLite consensus disorder prediction 18 41 - -
Acco09g1393 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 183 IPR003311 GO:0005634|GO:0006355
Acco09g1393 202 SUPERFAMILY CAD & PB1 domains 83 178 - -
Acco09g1393 202 MobiDBLite consensus disorder prediction 18 64 - -
Acco09g1393 202 Gene3D - 87 190 - -
Acco09g1393 202 ProSiteProfiles PB1 domain profile. 93 179 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1393 Acco-ChrAcco09 29362303 29366014 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1393 65 194 B3 DNA Binding Superfamily AT4G23980 36.154 1.20e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco09g1393 AUX_IAA 3.8e-43 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco07g0677 07 8212344 8214390 Acco09g1393 09 29362303 29366014 CCT
Acco09g1393 09 29362303 29366014 Acco09g1393 09 29362303 29366014 ECH