Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1392 ATGTCTTCGCCGGAGAATCAACCGCAAGATGCCGCCGTCGAGCTCAACCTCAACGATACCGAGCTCACCTTGGGACTTCCCGGCGCCGCCAAAACCGGTTCCAAACGTGGATTCTCCCACACCCTTGAAGCCTCCTCCAATAATGTCCATACCTCAACATCTGCTAAATCCCACGCACAAAAGGCACAGGTGGTGGGGTGGCCGCCGGTGAGGGCGAGCAGGAAGAGCATGATGAATAAATGCAAGTATGTGAAGGTGGCGGTGGACGGAGCTCCATATCTGAGAAAAGTAGATCTTGAAATGTATCAGAGCTATGATCAGCTTCTCAGCTCCTTAGAAACCATGTTTGCCTGCTTAACCATCCGGAAAAATGATTTGAATCAGAAGAATTGTGAGCTTGGAAAGAAAAATAATGGAGGTGAATACGTACCCACCTATGAGGACAAAGATGGTGACTGGATGATGGTTGGAGATGTTCCCTGGAACATGTTTGTTGAATCCTGCAAAAGAATAAGGTTGATGATGAGTTCTGAGGAGGCTACTACTGGGTTAGGTGCGAGAAGAGGTTCATCAGAGTGA 579 0.4853 MSSPENQPQDAAVELNLNDTELTLGLPGAAKTGSKRGFSHTLEASSNNVHTSTSAKSHAQKAQVVGWPPVRASRKSMMNKCKYVKVAVDGAPYLRKVDLEMYQSYDQLLSSLETMFACLTIRKNDLNQKNCELGKKNNGGEYVPTYEDKDGDWMMVGDVPWNMFVESCKRIRLMMSSEEATTGLGARRGSSE 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1392 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 15 180 IPR003311 GO:0005634|GO:0006355
Acco09g1392 192 MobiDBLite consensus disorder prediction 45 60 - -
Acco09g1392 192 Gene3D - 76 187 - -
Acco09g1392 192 MobiDBLite consensus disorder prediction 45 66 - -
Acco09g1392 192 SUPERFAMILY CAD & PB1 domains 73 174 - -
Acco09g1392 192 ProSiteProfiles PB1 domain profile. 81 180 IPR000270 GO:0005515
Acco09g1392 192 FunFam Auxin-responsive protein 76 188 - -
Acco09g1392 192 Pfam AUX/IAA family 79 180 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1392 Acco-ChrAcco09 29352395 29353314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1392 84 178 B3 DNA Binding Superfamily AT2G46530 33.684 7.25e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco09g1392 AUX_IAA 4.2e-44 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco09g1392 09 29352395 29353314 Acco09g1392 09 29352395 29353314 ECH