Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1308 ATGGCTTTATGCCCAATCTTTTGTTTTGGAAAGGGTTCGGATCGCAACGCACGAGAGAAGGCACAACCAACATGGCGAGTCTTTTCCTTAAAGGAACTACACTCAGCTACAAATAATTTCAATTATGATAATAAACTTGGAGAAGGAGGTTTTGGCAGTGTTTACTGGGGCCAGCTTTGGGATGGATCACAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAGCAAAGCAGATATGGAATTTGCTATTGAAGTTGAGGTATTGGCAAGAGTTCGACACAAGAATCTTCTTAGCCTGCGGGGCTATTGTGCTGAAGGACAGGAGCGGTTAATTGTATATGACTATATGCCAAATTTGAGCTTACTTTCTCATCTTCATGGACAGCACTCAGCAGAATGCCTTCTGGATTGGAGCAGACGGATGAGTATCGCAATTGGATCAGCAGAGGGAATCGCATATCTTCACCACCAAGCAACTCCACACATCATCCACAGAGATATTAAAGCGAGCAATGTGCTCTTGGATGCAGATTTCCAGGCTCAGGTTGCAGATTTTGGCTTCGCTAAGTTGATCCCTGAGGGGGCAACACATGTGACCACGAGAGTTAAGGGTACCCTTGGCTATCTAGCACCTGAGTATGCTATGCTAGGTAAAGCATCTGAGAGTTGTGATGTCTACAGTTTTGGAATTCTCTTGCTGGAACTTGCAAGTGGCAGGAAACCGATTGAAAAACTGAGTGCAACTGTGAAGCGGTCCATAACCGATTGGGCACTACCATTGGTTTTCGAGAAGAAATTTAGTGAAATTGCAGATCCAAGACTAAATGGTAATTATGTGGAAGAAGAACTTAAAAGGGTTGTCTATGTTGCACTTGTCTGTGCTCAGAATCAGCCTGAGAAGAGACCCAACATGCTGGATGTGGTAGAGCTATTGAAGGGAGAATCAAGAGTTAAGTTTTCTGAGCTAGAGAATCATGAACTTTTTAGAAGCCCTCAACCTACTGATTCCAATGAGGACAGAATAGAAGCTGCTGAGGATAGTTCAGCAAAAATTGAATCAAAACCTGAGTTGCAGGAGAACCCTGAGCCATAA 1092 0.4341 MALCPIFCFGKGSDRNAREKAQPTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSSKADMEFAIEVEVLARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAECLLDWSRRMSIAIGSAEGIAYLHHQATPHIIHRDIKASNVLLDADFQAQVADFGFAKLIPEGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELASGRKPIEKLSATVKRSITDWALPLVFEKKFSEIADPRLNGNYVEEELKRVVYVALVCAQNQPEKRPNMLDVVELLKGESRVKFSELENHELFRSPQPTDSNEDRIEAAEDSSAKIESKPELQENPEP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1308 363 MobiDBLite consensus disorder prediction 332 363 - -
Acco09g1308 363 ProSiteProfiles Protein kinase domain profile. 40 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco09g1308 363 Gene3D Transferase(Phosphotransferase) domain 1 116 328 - -
Acco09g1308 363 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Acco09g1308 363 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Acco09g1308 363 Gene3D Phosphorylase Kinase; domain 1 11 115 - -
Acco09g1308 363 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
Acco09g1308 363 Pfam Protein tyrosine and serine/threonine kinase 42 311 IPR001245 GO:0004672|GO:0006468
Acco09g1308 363 CDD STKc_IRAK 46 313 - -
Acco09g1308 363 SUPERFAMILY Protein kinase-like (PK-like) 21 311 IPR011009 -
Acco09g1308 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Acco09g1308 363 MobiDBLite consensus disorder prediction 323 363 - -
Acco09g1308 363 SMART serkin_6 40 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco09g1308 363 PANTHER OS01G0253100 PROTEIN 21 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1308 Acco-ChrAcco09 28406496 28409314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1308 28 314 Trihelix Transcription Factor Family AT1G70460 50.859 4.13e-97 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Acco09g1308 PK_Tyr_Ser-Thr 1.5e-42 CL0016