Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1302 ATGGCCGTTGTTTCTTTCTCTTTTCAACCTTATCTGCATCCCTCCTCCGCTCCTTCGTCGTCGTCGTCCTCCGCTTTTTTATGCGGTAGTGTCCATCTTCGGACCCATAAGAACTTCATCTCTATCCATTCTCCTTCCTATTTTCCTTCTTCGACATTAACTAATAAGTCCTCCTCGAGGAGCTTCCGAACGGCGATTGCTGCCTCTGGCGACTATTATACGACTCTTGGAGTCTCCAAATCCGCGACTAACAAGGAGATTAAGGTGGCTTATCGAAAGTTAGCTCGTCAGTACCATCCTGATGTGAACAAGGAACCTGGAGCTATTGACAAGTTCAAGGAAATTAGTGCTGCATATGAGGTGCTATCAGATGATAAGAAGAGGGCCTTGTATGATCAATATGGAGAGGCTGGTGTTAAGAGTGCTGTTGGAGGATCAAATGCTTATACGACTAATCCATTTGATTTGTTTGAAACATTTTTCGGGCCAAGTATGGGTGGCTTTGGTGGCATGGATCCAACTGGATTTGGAACACGCCGCCGCAGTACCGTTATTAAGGGTGGAGACATTCGTTATGATATTTTGTTGGAATTCTCTGAGGCAATTTTTGGAGCTGAAAAGGAATTTGAGCTTTCCCATCTGGAAAAGTGTGAAGCTTGTAATGGTACTGGAGCAAAGGTTGGCTCCAAGATGAGAATATGTTCAACTTGCGGAGGTAGGGGTCAGGTGATGAGGACTGAACAAACACCTTTTGGTTTGTTCTCACAGGTTTCAGTATGTCCAAACTGTGGAGGGGATGGTGAAGTCATATCTGAATTTTGTCGAAAATGTAATAGTGAAGGACGTATTCGGGTTAAAAAAACTATTAAAGTGAAAGTTCCTCCAGGTGTTAGCTCAGGCAGTATTCTGAGAGTTGCTGGGGAGGGAGATGCTGGACCTCGAGGGGGTCCTCCTGGTGATCTATTTGTGTATCTTGAATTGGAAGAGATTCCAGGAATTCAAAGAGATGGCATTAATCTCTCTTCAACAATAACAATAAGTTATCTGGATGCCATACTGGGGGTTGTTGTCAAGGTAAATACAGTTGAAGGCATTTCTGAACTACAAATTCCCCCTGGTACCCAACCTGGAGATATCCTTGTCCTTGAAAGGAAAGGTGTGCCAAAATTAAACAAACCATCAATACGTGGTGACCACTTATTTGCAGTTAAAGTTACAATACCAAAACGTATCAGTTCAAAGGAGCGCGAGTTGCTTGAGGAACTTGCTTCACGAGGCAGCAAAATGAGTAGCCCTTCAAAACCCCGTCCCAGCATTCACTCTTCCAAGGGAAGGGCTGAAAGTCCTGTTGCTCGAAGTGCTGAAAGTTCAACAGTGGTTGAAGAAACAACTGAACAGTCAAAAGACCAAGATGACATATGGAATACATTAAAGAATTTTGCTGGGTCGGTCGCAAATGGAGCTTTGAAGTGGCTAAAAGATAACCTGTAA 1491 0.4373 MAVVSFSFQPYLHPSSAPSSSSSSAFLCGSVHLRTHKNFISIHSPSYFPSSTLTNKSSSRSFRTAIAASGDYYTTLGVSKSATNKEIKVAYRKLARQYHPDVNKEPGAIDKFKEISAAYEVLSDDKKRALYDQYGEAGVKSAVGGSNAYTTNPFDLFETFFGPSMGGFGGMDPTGFGTRRRSTVIKGGDIRYDILLEFSEAIFGAEKEFELSHLEKCEACNGTGAKVGSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEFCRKCNSEGRIRVKKTIKVKVPPGVSSGSILRVAGEGDAGPRGGPPGDLFVYLELEEIPGIQRDGINLSSTITISYLDAILGVVVKVNTVEGISELQIPPGTQPGDILVLERKGVPKLNKPSIRGDHLFAVKVTIPKRISSKERELLEELASRGSKMSSPSKPRPSIHSSKGRAESPVARSAESSTVVEETTEQSKDQDDIWNTLKNFAGSVANGALKWLKDNL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1302 496 ProSitePatterns Nt-dnaJ domain signature. 112 131 IPR018253 -
Acco09g1302 496 ProSiteProfiles dnaJ domain profile. 71 135 IPR001623 -
Acco09g1302 496 Gene3D - 217 281 - -
Acco09g1302 496 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 37 427 - -
Acco09g1302 496 FunFam Putative Mitochondrial DnaJ chaperone 275 323 - -
Acco09g1302 496 Pfam DnaJ C terminal domain 190 408 IPR002939 -
Acco09g1302 496 SUPERFAMILY HSP40/DnaJ peptide-binding domain 334 419 IPR008971 GO:0006457|GO:0051082
Acco09g1302 496 MobiDBLite consensus disorder prediction 421 472 - -
Acco09g1302 496 FunFam Chaperone protein dnaJ A6 chloroplastic 68 173 - -
Acco09g1302 496 FunFam Molecular chaperone Hsp40/DnaJ family protein 333 425 - -
Acco09g1302 496 SMART dnaj_3 70 127 IPR001623 -
Acco09g1302 496 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 327 IPR008971 GO:0006457|GO:0051082
Acco09g1302 496 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 204 284 IPR036410 -
Acco09g1302 496 Hamap Chaperone protein DnaJ [dnaJ]. 68 480 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Acco09g1302 496 Pfam DnaJ central domain 217 281 IPR001305 GO:0031072|GO:0051082
Acco09g1302 496 Gene3D - 187 323 - -
Acco09g1302 496 FunFam Chaperone protein dnaJ A6 chloroplastic 217 281 - -
Acco09g1302 496 Gene3D DnaJ domain 68 171 IPR036869 -
Acco09g1302 496 Pfam DnaJ domain 71 132 IPR001623 -
Acco09g1302 496 NCBIfam molecular chaperone DnaJ 71 424 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Acco09g1302 496 ProSiteProfiles Zinc finger CR-type profile. 204 286 IPR001305 GO:0031072|GO:0051082
Acco09g1302 496 Gene3D - 333 425 - -
Acco09g1302 496 CDD DnaJ 71 124 IPR001623 -
Acco09g1302 496 CDD DnaJ_zf 217 281 IPR001305 GO:0031072|GO:0051082
Acco09g1302 496 CDD DnaJ_C 189 411 - -
Acco09g1302 496 PRINTS DnaJ domain signature 127 146 IPR001623 -
Acco09g1302 496 PRINTS DnaJ domain signature 91 106 IPR001623 -
Acco09g1302 496 PRINTS DnaJ domain signature 73 91 IPR001623 -
Acco09g1302 496 PRINTS DnaJ domain signature 107 127 IPR001623 -
Acco09g1302 496 SUPERFAMILY Chaperone J-domain 69 176 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1302 Acco-ChrAcco09 28354604 28361167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1302 57 134 C2H2 Transcription Factor Family AT1G74250 44.048 3.01e-09 57.4