Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1289 ATGGTAGAGGAGTTGCTAATGAAGTTGCAGAGCAAAGTTTGGTCAGATTGGGTGACGCTGAGCTTGAAAGAGTCGACCAGCTGTGACAAGGTCAGAGACAGAGCGATGGTGATGACGACCTTGATGGACCTAGTTATGAGTGACAGGAACGACGGCAATCGACGGCGTGACGCCGTGTTCTTCCTTATTGGAGATCATCTTCGGTCATCACGGAACTGCGATTTTGAACTCAATTTAGTTGATATGGAAGTCGATGATGATTACGTGGAGTATGTGCCCGTGGCCAAGCGGAGGGCCATGGAGGCTCAGAAGGTTCTTGAACGAAAAGGGATAGCTTCCTCCACAGTCGATGATAATTCGGAGAAGTCAAAAGTTGCTGAAGTTAAACCAAGTCTTCTGGTTAAGGCTTCTCAGTTGAAACGGGATCAACCTGAAATTAGTCCGACAGAGCAGATTGTTAGCCAGGAAAAGGAGATGATTGAGAACTTATCAGATCGAAAAACCCTAATGTCTGTTCGAGAATTGGCTAAGGGAATCACTTATACAGAGCCTTTGCGTACAGGATGGAAGCCACCTTTACCCATTAGAAGAATGTCTGAACAGCGACGTGATTTGATTAGGAAGCAGTGGCACATAATAGTTGACGGCGAAGATATCCCACCTCCAATTAAGAATTTCAAGGATATGAGGTTTCCTGATACAATTTTGAACAAGTTGAAAGACAGAGGGATTGTGCAGCCAACACCTATTCAAGTACAAGGCCTTCCTGTTACCTTATCTGGGAGGGATATGATTGGGATTGCATTCACAGGATCAGGGAAAACTCTTGTCTTTGTGTTGCCAATGATCATGCTGGCTTTGCAGGAGGAAATTATGATGCCTGTTGTTCCAGGAGAAGGTCCATTTGGTTTGATTGTGTGTCCTTCGAGGGAGCTCGCTAGACAAACTTACGAGGTGGTCGAACAGTTTCTGGTACCTTTGAGAGAAGCTGGATATCCTGAACTTAGGCCTTTGCTTTGTATTGGTGGAGTGGATATGAGATCTCAGCTAGAGGTTGTGAAGAAGGGTGTTCATATTGTTGTTGCCACTCCTGGGAGGTTGAAGGATATGTTGGCTAAGAAAAAAATGAATCTTGATAATTGTAGGTATTTAACATTAGACGAGGCTGATAGGTTGGTGGATTTGGGATTTGAAGATGACATAAGAGAAGTGTTTGATCACCTCAAAGCACAAAGGCAGACTCTCTTATTTTCTGCCACTATGCCGACTAAGATTCAGATTTTTGCTAGAAGTGCCTTAGTGAAACCTGTTATTGTCAATGTGGGGCGGGCAGGGGCGGCGAATCTTGATGTGATTCAGGAGGTGGAGTATGTTAAGCAAGAGGCAAAAATAGTTTATCTGCTTGAGTGCCTGCAAAAAACCCCACCTCCAGTTTTAATATTCTGTGAGAACAAGACAGATGTGGATGATATTCATGAATATCTTCTCCTGAAAGGAGTTGGAGCAGTGGCTGTTCATGGAGGCAAAGATCAGGAAGAAAGAGAGTATGCCATTGCAGCCTTTAAGTCTGGGAAGAAAGATGTGCTGGTTGCGACTGATGTCGCGTCCAAGGGTTTGGATTTCCCTGATATTCAGCATGTTATTAACTATGACATGCCTTCTGAGATCGAAAATTATGTTCATAGGATTGGTCGAACTGGAAGATGTGGCAGGACAGGCATAGCAACAACATTCATAAACAAGAATCAAAGTGAGACAACGTTGCTTGATTTGAAACATCTGTTGCAAGAAGCGAAACAGCGCATTCCCCCTGTTTTAGCAGATTTGAATGATTCAATGGAAGATAATGATGAAATTACCGGTAAAAGTGGGGTCAAGGGTTGTGCCTATTGTGGTGGGCTTGGTCACCGCATTCGCGAATGTCCCAAGCTGGAACATCAGAAAAGTGTGGCCATTGCAAATAGTAGAAGGGATTATTTTGGTTCTGGTGGATATAGGGGAGAGATCTGA 2010 0.4403 MVEELLMKLQSKVWSDWVTLSLKESTSCDKVRDRAMVMTTLMDLVMSDRNDGNRRRDAVFFLIGDHLRSSRNCDFELNLVDMEVDDDYVEYVPVAKRRAMEAQKVLERKGIASSTVDDNSEKSKVAEVKPSLLVKASQLKRDQPEISPTEQIVSQEKEMIENLSDRKTLMSVRELAKGITYTEPLRTGWKPPLPIRRMSEQRRDLIRKQWHIIVDGEDIPPPIKNFKDMRFPDTILNKLKDRGIVQPTPIQVQGLPVTLSGRDMIGIAFTGSGKTLVFVLPMIMLALQEEIMMPVVPGEGPFGLIVCPSRELARQTYEVVEQFLVPLREAGYPELRPLLCIGGVDMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHLKAQRQTLLFSATMPTKIQIFARSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKTDVDDIHEYLLLKGVGAVAVHGGKDQEEREYAIAAFKSGKKDVLVATDVASKGLDFPDIQHVINYDMPSEIENYVHRIGRTGRCGRTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLADLNDSMEDNDEITGKSGVKGCAYCGGLGHRIRECPKLEHQKSVAIANSRRDYFGSGGYRGEI 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1289 669 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 179 610 - -
Acco09g1289 669 CDD DEADc_DDX41 235 440 IPR044113 GO:0000398|GO:0003724|GO:0005524
Acco09g1289 669 Gene3D - 193 443 IPR027417 -
Acco09g1289 669 Pfam DEAD/DEAH box helicase 248 425 IPR011545 GO:0003676|GO:0005524
Acco09g1289 669 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 255 439 IPR014001 -
Acco09g1289 669 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 224 252 IPR014014 GO:0003724
Acco09g1289 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 585 IPR027417 -
Acco09g1289 669 Coils Coil 581 601 - -
Acco09g1289 669 SUPERFAMILY Retrovirus zinc finger-like domains 627 648 IPR036875 GO:0003676|GO:0008270
Acco09g1289 669 CDD SF2_C_DEAD 451 579 - -
Acco09g1289 669 ProSiteProfiles Zinc finger CCHC-type profile. 628 643 IPR001878 GO:0003676|GO:0008270
Acco09g1289 669 FunFam Probable ATP-dependent RNA helicase DDX41 449 612 - -
Acco09g1289 669 SMART ultradead3 243 454 IPR014001 -
Acco09g1289 669 SMART c2hcfinal6 627 643 IPR001878 GO:0003676|GO:0008270
Acco09g1289 669 Pfam Helicase conserved C-terminal domain 463 570 IPR001650 -
Acco09g1289 669 Gene3D - 449 611 IPR027417 -
Acco09g1289 669 FunFam Probable ATP-dependent RNA helicase DDX41 191 440 - -
Acco09g1289 669 SMART helicmild6 489 570 IPR001650 -
Acco09g1289 669 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 450 610 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1289 Acco-ChrAcco09 28213577 28218003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1289 212 609 Eukaryotic Initiation Factors Gene Family AT3G19760 31.421 9.47e-55 191