Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1269 ATGAAAGGTGGTTGTTCCTTATTGGTACTTCGCTTCTTTGAACGACTAACTGAATTGGTTGCTGATAGAAACATATGCTCCCAAGCTCTGCTTTCGAGGAGTCTCGTTGATCGCGAACCCCTCAAGAACTACGCTACCGCGATCGTGTGCCGCCGACTTTCACAGGTTAATTTAAATGCGATGGATGCTAATTGGAGACCCACACGAGGTACTGAATCCACTATGGATACAAGTGATTGGAGAACCCAACTGCAACCTGATTCACGTCAAAGAATTATCAACAAAATAATGGATACATTAAAGAGACAGCTTTTTGTTTCTAGTCAAGATGGATTGCATGAATTGCACAAAATTGCTCAAAGGTTTGAAGATAAGATTTATACTGCTGCAACAAGTCAGCCTGATTATCTTCGGAAAATATCTTTGAAGATGCTTACAATGGATAATAAAACCCAGAATACCATGGTCAACGCTCTGCAATCAAATGCAGGTGGCCCGAGCAACAATCCTATTGATTCAGGAATTCCTATGCAGTCTCTAGTTCACAATCCAGGGCAGTCACATGCTATTCCAGTGCCTAATCATAATCAGCAAGCTAATAATGTTCAACAGCCAACGCAACCTATGCTGCAGCAAGAGTCCCAATCTGTTATCAGGCAACAACAACAAAATGCATCAATTAATAACCAGCAACAAATCCCATTTTCTCAACAGCCAATATTGGCAACACAGCAGCAACAGCAACTTCTAGCGCTACAGTCAAATGTAACAAGCGTGCAACACCCTCAGCTACTTGGGCAACAAATTGATGTTGATATGCAGCAGCAACTGAGATTGCTTGTTGGGCAGCAGAATAATCCTCCAATCCTGCAGCTGCGTCAGCAACAGCAGCAGCAGTTGATAAATCAGCAAGACAATCTCACCAACATGCATCAGCAACAGTTGGGAAGTAACATCCCAGCGTTGCAACTACAACCGAAGCTTGCAACTCAGTCTGGCAACTCAAGCTTGCAGACTAACCCCTTGCAACAAGATATGCAGCAAAGACTTCAGGCTTCGAGTCCTTTGCTTCAACAGCAAAATGTACTACTTGATCAACAAAAGCAATTATATCAGTCACAAAGAGCTCTTCCTAATTCATCAAGAACTTCTCTAGACTCAACAACACAGACCAGAAGACCTGAAGAGGATGATTGGAAAGAAGAGGTGTACCAAAAGATCAAGTCCATGAAAGAATCGTACTTGCCAGAATTGTCTGAAATGCACCAGAAAATTGAAGCTAAACTTCAGCAGCGTGAAGCCCTTCCAGATGGACCCTGGTCAGATCAACTTTCAAGGCTGAAGATGTTCAAAACATTGTTGGAGCGCCTCCTGGCATTTCTACAGCTTTCCAAGAGCAGTGTTCTGCCTAGTTTCAAGGAAAAATTGGTTTCATATGAGAAGCAGATCTTAAACTTTATAGAAACAAATAGGCCCAGGAAAGCCATGTCTTCTATGCAGCGAGGGCAACTTCCTCCACCTCATATTCACCCAGTACCACAGTCACAATCCCAACTTACTCAAGTGCAATCTCATGAAAATCAAATGAACTCTCAGATGCAATCGACAAACTTTCAGAGTTTTGTGAATTTCCTGCCGCAGGTTGGAGTGAGCTCCCTTCAACAAAACTCTCTGAACGCTCCTCAACAGCAAAATGTACTTGATCAACAAAAGCAATCATATCAGTCGCAAAGAAATCTTCTTGTTTCATCATCATCTTCTCTAGGTTCAACTGCACTGACTGGAAAATCTGGTGGGGATGATTGGCAAGAAGAGGCTTACCAAAAGAAAAAGAATGTGAGAAAGTCTCCTGAACCCCCCGAAGAGCCAGTTTTCAACTGCCCAATATGTATGGATCCTTTGGTAGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAGCTGCATTAGGGCTGCAATAAATGCACAGGGTAAATGCCCTACCTGTAGGAAAAAGGCCAATGTGAAAGAGCTCATTAGGGTTTTTCTCCCATCAGCTAGTTGA 2049 0.427 MKGGCSLLVLRFFERLTELVADRNICSQALLSRSLVDREPLKNYATAIVCRRLSQVNLNAMDANWRPTRGTESTMDTSDWRTQLQPDSRQRIINKIMDTLKRQLFVSSQDGLHELHKIAQRFEDKIYTAATSQPDYLRKISLKMLTMDNKTQNTMVNALQSNAGGPSNNPIDSGIPMQSLVHNPGQSHAIPVPNHNQQANNVQQPTQPMLQQESQSVIRQQQQNASINNQQQIPFSQQPILATQQQQQLLALQSNVTSVQHPQLLGQQIDVDMQQQLRLLVGQQNNPPILQLRQQQQQQLINQQDNLTNMHQQQLGSNIPALQLQPKLATQSGNSSLQTNPLQQDMQQRLQASSPLLQQQNVLLDQQKQLYQSQRALPNSSRTSLDSTTQTRRPEEDDWKEEVYQKIKSMKESYLPELSEMHQKIEAKLQQREALPDGPWSDQLSRLKMFKTLLERLLAFLQLSKSSVLPSFKEKLVSYEKQILNFIETNRPRKAMSSMQRGQLPPPHIHPVPQSQSQLTQVQSHENQMNSQMQSTNFQSFVNFLPQVGVSSLQQNSLNAPQQQNVLDQQKQSYQSQRNLLVSSSSSLGSTALTGKSGGDDWQEEAYQKKKNVRKSPEPPEEPVFNCPICMDPLVEEMSTRCGHIFCKSCIRAAINAQGKCPTCRKKANVKELIRVFLPSAS 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1269 682 ProSiteProfiles Zinc finger RING-type profile. 627 665 IPR001841 -
Acco09g1269 682 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 500 610 IPR044661 GO:0003713|GO:0031490
Acco09g1269 682 MobiDBLite consensus disorder prediction 509 533 - -
Acco09g1269 682 MobiDBLite consensus disorder prediction 373 388 - -
Acco09g1269 682 Pfam Zinc finger, C3HC4 type (RING finger) 626 664 - -
Acco09g1269 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 600 680 IPR013083 -
Acco09g1269 682 MobiDBLite consensus disorder prediction 513 533 - -
Acco09g1269 682 SMART ring_2 627 664 IPR001841 -
Acco09g1269 682 ProSitePatterns Zinc finger RING-type signature. 642 651 IPR017907 -
Acco09g1269 682 FunFam Mediator of RNA polymerase II transcription subunit 15a 79 157 - -
Acco09g1269 682 Pfam KIX domain 78 157 IPR036546 -
Acco09g1269 682 SUPERFAMILY RING/U-box 626 670 - -
Acco09g1269 682 MobiDBLite consensus disorder prediction 373 399 - -
Acco09g1269 682 Gene3D Coactivator CBP, KIX domain 79 158 IPR036529 GO:0003712|GO:0006355
Acco09g1269 682 SUPERFAMILY Kix domain of CBP (creb binding protein) 77 153 IPR036529 GO:0003712|GO:0006355
Acco09g1269 682 Coils Coil 293 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1269 Acco-ChrAcco09 27873916 27881611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1269 522 680 C3H Transcription Factor Family AT3G07200 36.810 2.14e-26 104