Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1243 ATGAAATCAATTCAGATGAGCAAACATCCCAGTGCTGAAGAATGGACCATAGAAGAAGGAGGCTTACCCAAAGTCTCTGGCTCATTGCCTTCCCCTCCTGTCCCTCTTGGAAGAAAGGTAGGAGCTGAGTTTGTAGGAACATTAATTCTCATGTTTGCTGGTATTTCCACTGCTATCGTGAACCAAAGGACACCAGGTTCTGAGACTCTAGTTGGGAGTGCTGCCTCTACTGGTCTTGCTGCTATGGTTGTTGTCCTCGCCACCGGTCACATCTCCGGTGCTCATCTCAACCCTGCAGTCACAATTTCCTTTGCTGCTTTAAAGCACTTCCCATGGAAACATGTTCCCGTGTATATTGGCACACAAGTTATGGCGTCCATATGTGCAGCATTTGCTTTAAAGGGGATGTTTCACCCCTTCATGAGTGGAGGAGTCACAGTTCCTTCAGGAGGATATGCTCAAGCTTTTGCTTTAGAATTCATTATCAGCTTTATTCTCATGTTTGTTGTCACAGCAGTGGCCACTGACACAAGAGCTGTGGGGGAGCTTGCTGCAATTGCAGTGGGAGCGACTGTCATGCTCAACATACTTATAGCTGGGCCAGCAACAGGAGGATCAATGAACCCAGTGAGAACACTAGGTCCAGCTATTGCTACAAATAACTACAAAGACATATGGGTCTACCTCAGTGCTCCTATTCTAGGCGCTCTTAGTGGGGCAGGAATCTACACTGCAGTCAAGCTTCCAGAAGCAAACGGTGAAACACAAGGAAAGGCTTCAACGCCCCGGAGCTTCAGAAAGTGA 804 0.4751 MKSIQMSKHPSAEEWTIEEGGLPKVSGSLPSPPVPLGRKVGAEFVGTLILMFAGISTAIVNQRTPGSETLVGSAASTGLAAMVVVLATGHISGAHLNPAVTISFAALKHFPWKHVPVYIGTQVMASICAAFALKGMFHPFMSGGVTVPSGGYAQAFALEFIISFILMFVVTAVATDTRAVGELAAIAVGATVMLNILIAGPATGGSMNPVRTLGPAIATNNYKDIWVYLSAPILGALSGAGIYTAVKLPEANGETQGKASTPRSFRK 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1243 267 CDD MIP 38 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Acco09g1243 267 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Acco09g1243 267 Pfam Major intrinsic protein 38 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Acco09g1243 267 FunFam Aquaporin NIP2-1 27 258 - -
Acco09g1243 267 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Acco09g1243 267 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Acco09g1243 267 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Acco09g1243 267 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Acco09g1243 267 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Acco09g1243 267 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Acco09g1243 267 PANTHER AQUAPORIN NIP2-1 18 251 IPR034294 -
Acco09g1243 267 SUPERFAMILY Aquaporin-like 35 252 IPR023271 -
Acco09g1243 267 Gene3D Glycerol uptake facilitator protein. 31 259 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1243 Acco-ChrAcco09 27430020 27434589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1243 13 267 Major Intrinsic Protein MIP AT1G80760 75.686 8.57e-134 378