Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1235 ATGGCTGTCACTGGTTCAACATCTGGACAGCCGCAATTCATTATGAGCAATGGAAACCGAAGCTCTTCCAATGCTCCTCTCATTGAAAACTCAGACACTGATCAAATTGTTGTCCCTGATCAAACAAGCTGGAAAAACTTATTCGCATATATGGGTCCTGGGTTTCTTGTTTCTATTGCATATATAGACCCAGGAAACTTTGAAACGGATCTTCAGTCAGGGGCACAATATAAATATGAGTTACTTTGGATTATATTGGTGGCCTCTTGTGCTGCTCTTATAATTCAAACAATGGCAGCCAATTTAGGAGTTGTTACTGGAAAACATTTAGCAGAGCATTGTAGAACTGAGTATCCTCGGACAACTAACTTCATCTTATGGGTTATTGCCGAAATTGCCATTGTGGCATGTGACATACCTGAAGTGATCGGGACGGCCTTTGCTTTGAACATGCTTTTCAGCTTACCTATTTGGATTGGTGTTCTTTTAACAGGGCTCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGGTGAGGAAACTTGAGTTCTTGATTGCGTTTCTGGTGCTTACAATTGCTGCATGCTTTTTCGCTGAACTTGGGTATGCAAGGCCTGATGCTAAAGAAGTTTTGGAGGGTCTTTTTGTACCAAAACTCAAAGGAGATGGTGCTACTGGTCTTGCAATTTCTCTACTCGGTGCTATGGTTATGCCGCACAATCTCTTCCTCCACTCAGCACTAGTGCTCTCTCGAAAAATACCGCGATCAGTTCATGGAGTCAAAGAGGCTTGTAGATTTTACATGATAGAAAGTGCGTTTGCTCTTACGGTAGCTTTCCTCATAAATGTTTCTATTATCTCTGTGAGTGGCACGGTTTGCAATTCTCCGAACATGAGTGCAGAAGATCAAGCGAGCTGTCAGGATTTGGACTTGAACAAAGCTTCCTTTCTACTAAAAAATGTACTGGGTAAATGGAGTTCAAAACTGTTTGCGATCGCTTTGCTCGCTTCGGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAATATGTCATGCAGGGATTTCTTGATTTACGACTGAAACCATGGATACGAAATTTTTTGACTCGATGTTTAGCCATAGTCCCTAGTTTAGTTGTTGCTGTCATTGGTGGCTCTGCTGGGGCAGGGAAGCTCATAATTATTGCATCAATGATCTTATCATTTGAACTTCCTTTTGCTTTGATTCCACTCCTCAAGTTCACTAGCAGCAAAACCAAGATGGGCGCTTATGTCAACTCATTCACGTTATCAGTTGTGACATGGATCATCGGTTCGTTGATAATGGCGATAAATCTCTTCTACTTACTGACCAGCTTCGTCAAGTTGCTTCTTCACAGTGACTTGAAAATGGTGGGTAAGGTGTTTGTGGGGATGTTAGGGTTTTCAGGCATAGCAGTATATTTGGCAGGGATTGCTTATCTGGTGTTCCGCAAGAGCAAGAAGACAACACATCTTTTGTCACTAACAACACCTGAAAATAGACAAATGGAAAATGAACAAGGCAATGGATCAATGTATTGCCTCCCAAGAGAAGACATAGTTAGCATGCAATTGCCTCAGAGAAGTAACTTAGCTTCTGATCTCTGA 1635 0.4177 MAVTGSTSGQPQFIMSNGNRSSSNAPLIENSDTDQIVVPDQTSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQTMAANLGVVTGKHLAEHCRTEYPRTTNFILWVIAEIAIVACDIPEVIGTAFALNMLFSLPIWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVLTIAACFFAELGYARPDAKEVLEGLFVPKLKGDGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVHGVKEACRFYMIESAFALTVAFLINVSIISVSGTVCNSPNMSAEDQASCQDLDLNKASFLLKNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWIRNFLTRCLAIVPSLVVAVIGGSAGAGKLIIIASMILSFELPFALIPLLKFTSSKTKMGAYVNSFTLSVVTWIIGSLIMAINLFYLLTSFVKLLLHSDLKMVGKVFVGMLGFSGIAVYLAGIAYLVFRKSKKTTHLLSLTTPENRQMENEQGNGSMYCLPREDIVSMQLPQRSNLASDL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1235 544 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 26 498 IPR001046 GO:0016020|GO:0030001|GO:0046873
Acco09g1235 544 NCBIfam Nramp family divalent metal transporter 52 420 - -
Acco09g1235 544 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Acco09g1235 544 Hamap Divalent metal cation transporter MntH [mntH]. 39 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Acco09g1235 544 MobiDBLite consensus disorder prediction 1 25 - -
Acco09g1235 544 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Acco09g1235 544 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Acco09g1235 544 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Acco09g1235 544 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Acco09g1235 544 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Acco09g1235 544 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Acco09g1235 544 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Acco09g1235 544 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1235 Acco-ChrAcco09 27297256 27302263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1235 16 544 Inorganic Solute Cotransporters AT1G15960 77.401 0.0 853