Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1152 ATGGATGGTATTCATGGGAATGATTCTGGGATACACATGAGTGATGCCCAACATCCAATGCATGTGCCATATGTGACTGAAAACGAACAACATGGATTGGACCATATGAGTGATGGGCATAGGATGGAAGACGATAACAATTGTGGTGATACTAATGTTAGCGGACATGAGAGCATAGAAGAAGTTGCCAACCCTGGAAATGTTACTGACGATCATGGTGCAATAATTGAACAAGCTAGTGGTGACCAGCTCACGTTGTCTTTTCAAGGCCAGGTTTATGTATTTGACTCTGTGTCGCCAGAAAAGGTTCAAGCTGTGCTTTTACTATTGGGAGGCCGTGAAGTACCTTCCATGTCTGCAAATACAATGAATGTTCACCATAATAATCGGGATATGTCTGGAGCTCCAGCAAAACTCAGTGTCCCTCAAAGACTAGCCTCATTGATTAGATTTCGAGAAAAGCGGAAAGAAAGGAATTTTGAAAAGAAAATACGTTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAGAGAAATAAAGGTCAATTTACCTCTTCCAAGTCAAACCCTGATGAATCTGTGCCAGCTGCAACAAATTTGGGGACAAATGAAAACTGGACACCAGACAATATTGGATCCCAACAGCAGGATGTTGTCTGTAGGCACTGTGGCATTAGCGAGAAATGCACACCAATGATGCGACGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCATGTGGACTTATGTGGGCAAATAAGGGAACTCTAAGGGACCTGACAAAAACTCCCTTGCCTGCACACAATTCTTCATTAAATAGGAATGAGAATAAAAGTTTAGGCCAGGCAGGTAGTTCTTAG 861 0.4274 MDGIHGNDSGIHMSDAQHPMHVPYVTENEQHGLDHMSDGHRMEDDNNCGDTNVSGHESIEEVANPGNVTDDHGAIIEQASGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSMSANTMNVHHNNRDMSGAPAKLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSSKSNPDESVPAATNLGTNENWTPDNIGSQQQDVVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLTKTPLPAHNSSLNRNENKSLGQAGSS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1152 286 PANTHER GATA TRANSCRIPTION FACTOR 28 25 276 IPR045280 GO:0006355
Acco09g1152 286 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 272 - -
Acco09g1152 286 ProSiteProfiles Tify domain profile. 77 112 IPR010399 -
Acco09g1152 286 Pfam tify domain 80 111 IPR010399 -
Acco09g1152 286 CDD ZnF_GATA 219 262 IPR000679 GO:0006355|GO:0043565
Acco09g1152 286 Pfam GATA zinc finger 220 256 IPR000679 GO:0006355|GO:0043565
Acco09g1152 286 MobiDBLite consensus disorder prediction 263 286 - -
Acco09g1152 286 ProSitePatterns GATA-type zinc finger domain. 220 247 IPR000679 GO:0006355|GO:0043565
Acco09g1152 286 ProSiteProfiles CCT domain profile. 144 186 IPR010402 GO:0005515
Acco09g1152 286 MobiDBLite consensus disorder prediction 181 210 - -
Acco09g1152 286 SMART tify_2 77 112 IPR010399 -
Acco09g1152 286 Pfam CCT motif 144 186 IPR010402 GO:0005515
Acco09g1152 286 Gene3D - 211 277 IPR013088 GO:0006355|GO:0008270
Acco09g1152 286 ProSiteProfiles GATA-type zinc finger domain profile. 214 262 IPR000679 GO:0006355|GO:0043565
Acco09g1152 286 SMART GATA_3 214 272 IPR000679 GO:0006355|GO:0043565
Acco09g1152 286 MobiDBLite consensus disorder prediction 261 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1152 Acco-ChrAcco09 25925339 25928782 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1152 1 280 Tify Gene Family AT1G51600 58.824 1.15e-114 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco09g1152 CCT 1.3e-14 CL0281