Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1110 ATGATTAATGCTACTGATGATCCTGAGTCTGCGGAAATCAATCAAGCCCTAGAGGAATCCATGCAACACCTATTTATAGTTCCAACATCGCAAGAGGCTATAGTACTGCTGAAGAAGATGAAGATTCCTGATGATAAAGTAAAGGAATTAGGCCAATGTAGCATTTGCTTAGAAGATTTTGATGACTGCGATGATGGTGATTATGTTTTAGAACTACCCTGTGACCATTTTTTCCACAATAATTGTATTGTGAAATGGCTAAACACTTGTCATACTTGCCCATTGTGTCGCTTTGAATTGCCTATAGAATAG 312 0.3782 MINATDDPESAEINQALEESMQHLFIVPTSQEAIVLLKKMKIPDDKVKELGQCSICLEDFDDCDDGDYVLELPCDHFFHNNCIVKWLNTCHTCPLCRFELPIE 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1110 103 SUPERFAMILY RING/U-box 37 101 - -
Acco09g1110 103 ProSiteProfiles Zinc finger RING-type profile. 53 97 IPR001841 -
Acco09g1110 103 SMART ringv_2 52 97 IPR011016 GO:0008270
Acco09g1110 103 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 26 101 - -
Acco09g1110 103 SMART ring_2 53 96 IPR001841 -
Acco09g1110 103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 102 IPR013083 -
Acco09g1110 103 Pfam Ring finger domain 52 97 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1110 Acco-ChrAcco09 25336040 25336351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1110 28 101 C3H Transcription Factor Family AT1G14200 39.189 5.96e-16 67.8