Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1055 ATGGAGACGCGCGAGTGCAAGCTCTGCTTCAAAACCTTCTCTAATGGAAGAGCTCTGGGAGGTCACATGAGGTCTCACATGAAGAAGCTTCCTCTACCTTCCAAACGAGAGGAATCTCGATCACCTTCTCCGACCTTACTGAGTTTCGACACCGACTCGCCGTCTTCTTCTTCATCATCGGAAGATGAAGGAGACGCCGATCTGAGATATGTCTTAAGAGATGCTCCGAAGAGGAGAATTCGCATCGTAGATCCTGAGTTTTCCTTTGTTGTGGATCCTAATGGCTCTGTGATTCAAGATAGAGAGAGCGAGACGGAGACCGAGTCATCGAAGAAGCCAACTCAGAAACGATCCAGACGCGCTTGGAAACTCGGTAGTTTCGATGATGATGATGATTACTGTCACAAGAAAATTCAGCAGCAAGAAAGGGTGGAAAAGATCAAATCGAACGAACTGTGTAAGACCGAGCCGTGGATTGCGGAGGCTGAACCGGTGAGTTCGATCTCCGACACGACCACCGAAGAAGACGTCGCGTACTGCCTTATGATGCTTTCTAGAGACAAATGGAGGAGACAAAACGATCTGAAAGACCAATACAAAGTCGTGGAGGAAGACGAGGACAAGGATAAAGATGAAGATGAAGATGAAGATGAAGAATACGATGCCGATGAATCCGAGGCGGTTTTCAAGTCGTTGAAATCCAAAAGTTGCGGTAAGTACACGTGTGAGACGTGCAAAAAGGTGTTTCGATCTTATCAAGCACTTGGTGGTCACAGAGCGAGTCACAAGAAGATCAAAGTGGAGCTCGAGAATCATAATAATGGAGGCACTTCATCTTCTTCTTCAACGTTCCATCAGAAAACTCATGAATGCCCAGTCTGTTTCAGAGTGTTTGCTTCAGGTCAAGCTATTGGGGGACACAAAAGGACCCATCTTACTGGTTCGTCGACATTACCACCCACTCGAGCTTCCACTAAACTGGTTGGAAATTTCATAGATCTTAACCTTCCTGCTCCGACGGCAGACGAAGACAATATAAGCCAAATCGACAATTCTGGAGTTTCAGATGCAGAATTCCTCGTTGATCGCATCAGACAGTGA 1101 0.465 METRECKLCFKTFSNGRALGGHMRSHMKKLPLPSKREESRSPSPTLLSFDTDSPSSSSSSEDEGDADLRYVLRDAPKRRIRIVDPEFSFVVDPNGSVIQDRESETETESSKKPTQKRSRRAWKLGSFDDDDDYCHKKIQQQERVEKIKSNELCKTEPWIAEAEPVSSISDTTTEEDVAYCLMMLSRDKWRRQNDLKDQYKVVEEDEDKDKDEDEDEDEEYDADESEAVFKSLKSKSCGKYTCETCKKVFRSYQALGGHRASHKKIKVELENHNNGGTSSSSSTFHQKTHECPVCFRVFASGQAIGGHKRTHLTGSSTLPPTRASTKLVGNFIDLNLPAPTADEDNISQIDNSGVSDAEFLVDRIRQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1055 366 MobiDBLite consensus disorder prediction 200 225 - -
Acco09g1055 366 Pfam C2H2-type zinc finger 4 29 - -
Acco09g1055 366 Pfam C2H2-type zinc finger 240 264 - -
Acco09g1055 366 Pfam C2H2-type zinc finger 289 312 - -
Acco09g1055 366 ProSitePatterns Zinc finger C2H2 type domain signature. 291 311 IPR013087 -
Acco09g1055 366 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Acco09g1055 366 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Acco09g1055 366 Gene3D Classic Zinc Finger 237 311 - -
Acco09g1055 366 MobiDBLite consensus disorder prediction 94 120 - -
Acco09g1055 366 SUPERFAMILY beta-beta-alpha zinc fingers 5 31 IPR036236 -
Acco09g1055 366 SMART c2h2final6 4 26 IPR013087 -
Acco09g1055 366 SMART c2h2final6 240 262 IPR013087 -
Acco09g1055 366 SMART c2h2final6 289 311 IPR013087 -
Acco09g1055 366 MobiDBLite consensus disorder prediction 38 61 - -
Acco09g1055 366 MobiDBLite consensus disorder prediction 99 120 - -
Acco09g1055 366 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 361 IPR044303 GO:0006355
Acco09g1055 366 SUPERFAMILY beta-beta-alpha zinc fingers 240 311 IPR036236 -
Acco09g1055 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 267 IPR013087 -
Acco09g1055 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Acco09g1055 366 MobiDBLite consensus disorder prediction 206 224 - -
Acco09g1055 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 289 311 IPR013087 -
Acco09g1055 366 MobiDBLite consensus disorder prediction 20 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1055 Acco-ChrAcco09 24213246 24214346 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1055 1 349 C2H2 Transcription Factor Family AT3G60580 38.889 1.09e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco09g1055 zf-C2H2_6 3.5e-08 CL0361