Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1053 ATGATGGTGAGAGGAAAAACTGAGATGAAACGCATAGAAAATGATACGAGTAGGCAAGTGACGTTCTTGAAGAGAAGGAATGGGCTGCTTAAGAAGGCTTTTGAGCTGTCTGTGCTATGCTATGCTGAAGTTTCACTCATTATCTTCTCACACAGCGGCAGGCTTTCTGAGTTCTCGAGTTCTAGGCATGTTCTACTGATTTTGGATATTTTTGATCCATTGGCTCCAGGTACAACTATCATGTCAACTAGCTTGTACTATTCGATGATAAAGCTTGATCGAATTTGTAGGGAGGCAAATGTTATATTGATCTTTGCTCGTTCTTATGGGCTTGCAAGCCTTGCAGAAGGCATTGAGTTGAATGTTCAAGATCCTGTGGCTCATAAGCACATACCACATGTTATTATTCTTGTCAAGATGGCTTATGAGTGGGCCAAAAGCCATCGAGATGCACTACCATATGTTATTATTCTTATCAACGCTAGAATGCTTAGGCAAGATGAAGATAATTATAAAGAAGCTATTGAGGCCTCTTTCAAAGTCTTTGCTCCTCAAGGAATTAGTAAGTATTAG 573 0.3997 MMVRGKTEMKRIENDTSRQVTFLKRRNGLLKKAFELSVLCYAEVSLIIFSHSGRLSEFSSSRHVLLILDIFDPLAPGTTIMSTSLYYSMIKLDRICREANVILIFARSYGLASLAEGIELNVQDPVAHKHIPHVIILVKMAYEWAKSHRDALPYVIILINARMLRQDEDNYKEAIEASFKVFAPQGISKY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1053 190 ProSitePatterns MADS-box domain signature. 4 58 IPR002100 GO:0003677|GO:0046983
Acco09g1053 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 58 IPR002100 GO:0003677|GO:0046983
Acco09g1053 190 CDD MADS_MEF2_like 4 61 IPR033896 GO:0000977|GO:0045944
Acco09g1053 190 ProSiteProfiles MADS-box domain profile. 2 62 IPR002100 GO:0003677|GO:0046983
Acco09g1053 190 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Acco09g1053 190 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Acco09g1053 190 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Acco09g1053 190 SUPERFAMILY SRF-like 2 71 IPR036879 GO:0003677|GO:0046983
Acco09g1053 190 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 92 - -
Acco09g1053 190 Gene3D - 14 78 IPR036879 GO:0003677|GO:0046983
Acco09g1053 190 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 87 184 IPR035985 GO:0008641
Acco09g1053 190 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1053 Acco-ChrAcco09 24155358 24156841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1053 2 61 MADS-box Gene Family AT2G45660 85.000 9.84e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco09g1053 SRF-TF 6e-23 No_clan