Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1052 ATGTCTTTTATGGACAGCGATAAAAAATCCATCTTGAACCACGTCTGCAAAATCTGCAAGAAAGGGTTTGGGTGTGGCAGAGCTCTCGGAGGACACATGAGGGCGCATGGCATCGGAGACGAGAGCAGCGCGATGGACGACGACGACGACGACGCGGCCAGCGACTGGGAAGACAGAAAACTCGACGAAGACAACAATGATAATATTGATCCCTCCAATAAACGGATGTACGCTTTGAGGGCGAACCCTAATCGGTTGAAGAGTTGTATGACTTGCGAGAATTGTGGTAAGGAATTCAAACGCTGGAGGTCTCTTCTTGAACATCGTAAATGCTGTTCTGACGACGCCGGTGACGAGTTCTTCTTCTTATCGCCGGGTTCGGACGGCGATGATATGTCAGGTGGGAGAGGTTGTAGCTGGTCTAAGAAGAAAAGATCTTTCAGAACCAAAGTGGGAATCAGCTTCAATAATAACGACCCTAATTGCTCATCATCCAATGAGGATGAAGACCTTGCTAACTGTTTAATGATGCTGTCCAACGACGCCCGTGATTCTTCTACGTTGGCAAGCATAGAAGAAGAGGGAAGAAATCCTAGTCTCGGCTTGATGGCTCCAATATCATCAGATCATAACAACAAAGCCAAAGAGGTAGAGAATAATAACAACAACAAGAGTGCGTTTGAATGCAAAGCATGCAAGAAAGTGTTTAATTCCCATCAAGCATTAGGTGGTCACAGGGCGAGCCACAAGAAAGTCAAAGGTTGCTTCGCCGCGCGACTCCACAGCCACGACGAGGCCAGCACTGATGCAGCTGATGATGACATCATCACGGCAGAAGATCCACTCTTCACAACCAATCATAAATCCAACGACAACAATTCAACCCTTGACTTAGATCAGGGCTCCAACAATAACAATGCCGCCTCCTTTAAAAGGAAATCCAAAGTTCATGAATGTTCGATATGTCAGAGAGTTTTCTCGTCGGGGCAAGCTCTTGGAGGACACAAGCGGTGTCATTGGATCACATCAACCGCACCAGACACCTCAACACTGGCTAGGTTTCAACAATTTCAAGACCAAATAGAACAACACATGAAGAATAATAATCCAGTTATACCTAGTCATAACAAGTTTTCAGACTCGGACGATGACCCGATTCATCTGAAGCTCGATCTCAACCTCCCGGCTCCGTCGACGGCACGCAATGTCTCCGCAGAAACCTACTTACAGTCATGGGTAGCTGGTGGGGGTAAAGTAGCAAAGCAACATGAAGATAACAACAGTCAAAGCCATCAAAATCAGTATGGTCATCATGAACTTGACAATGAGAATAGCAATGATGAAGAAGGAAAGAACAATAACAGATACCTTAACATTAGCAAAGATTCAATGGTGCAAAAAGTGGTGGAAGACAAAGAAGATAATAATAGTAAGGTGAAGTTAGCGAAACTAAGTGAAGATGATGTAGGAGGAAGTTCTTTGCCATGGTTACAGGTGGGAATCGGCTCCACTACTACTACTGACGTCGGAAATGGCGGATAA 1542 0.454 MSFMDSDKKSILNHVCKICKKGFGCGRALGGHMRAHGIGDESSAMDDDDDDAASDWEDRKLDEDNNDNIDPSNKRMYALRANPNRLKSCMTCENCGKEFKRWRSLLEHRKCCSDDAGDEFFFLSPGSDGDDMSGGRGCSWSKKKRSFRTKVGISFNNNDPNCSSSNEDEDLANCLMMLSNDARDSSTLASIEEEGRNPSLGLMAPISSDHNNKAKEVENNNNNKSAFECKACKKVFNSHQALGGHRASHKKVKGCFAARLHSHDEASTDAADDDIITAEDPLFTTNHKSNDNNSTLDLDQGSNNNNAASFKRKSKVHECSICQRVFSSGQALGGHKRCHWITSTAPDTSTLARFQQFQDQIEQHMKNNNPVIPSHNKFSDSDDDPIHLKLDLNLPAPSTARNVSAETYLQSWVAGGGKVAKQHEDNNSQSHQNQYGHHELDNENSNDEEGKNNNRYLNISKDSMVQKVVEDKEDNNSKVKLAKLSEDDVGGSSLPWLQVGIGSTTTTDVGNGG 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1052 513 Gene3D Classic Zinc Finger 12 112 - -
Acco09g1052 513 SUPERFAMILY beta-beta-alpha zinc fingers 14 110 IPR036236 -
Acco09g1052 513 ProSitePatterns Zinc finger C2H2 type domain signature. 16 36 IPR013087 -
Acco09g1052 513 PANTHER OS02G0659100 PROTEIN 7 506 - -
Acco09g1052 513 SMART c2h2final6 14 36 IPR013087 -
Acco09g1052 513 SMART c2h2final6 90 110 IPR013087 -
Acco09g1052 513 SMART c2h2final6 227 249 IPR013087 -
Acco09g1052 513 SMART c2h2final6 317 339 IPR013087 -
Acco09g1052 513 MobiDBLite consensus disorder prediction 419 455 - -
Acco09g1052 513 MobiDBLite consensus disorder prediction 37 73 - -
Acco09g1052 513 Gene3D Classic Zinc Finger 224 339 - -
Acco09g1052 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 254 IPR013087 -
Acco09g1052 513 MobiDBLite consensus disorder prediction 284 307 - -
Acco09g1052 513 MobiDBLite consensus disorder prediction 436 450 - -
Acco09g1052 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 14 36 IPR013087 -
Acco09g1052 513 Pfam C2H2-type zinc finger 316 341 - -
Acco09g1052 513 Pfam C2H2-type zinc finger 226 251 - -
Acco09g1052 513 Pfam C2H2-type zinc finger 14 36 - -
Acco09g1052 513 SUPERFAMILY beta-beta-alpha zinc fingers 227 339 IPR036236 -
Acco09g1052 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 120 IPR013087 -
Acco09g1052 513 ProSitePatterns Zinc finger C2H2 type domain signature. 229 249 IPR013087 -
Acco09g1052 513 MobiDBLite consensus disorder prediction 43 57 - -
Acco09g1052 513 ProSitePatterns Zinc finger C2H2 type domain signature. 319 339 IPR013087 -
Acco09g1052 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 317 339 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1052 Acco-ChrAcco09 24145939 24147480 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1052 119 344 C2H2 Transcription Factor Family AT1G02040 38.767 1.26e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco09g1052 zf-C2H2_6 3.7e-12 CL0361