Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1050 ATGGCTTTCACTCTCCAACTTGTTCAACATCCATTATTTCATTTGTATTTTGTTTCTCTCTCACTTTGCTTTTCCATTTTTATGGTCACTCCTTCCTCTTGCTTCACACCCAGAAAGTTACTTAATGCTTCTTCTTACTCCCCTTCTGGCTCAGATTGGTCTCCGGCCGAGGCCACTTGGTACGGCAGCCCCACCGGTGCTGGAAGTGATGGGGGTGCATGTGGATATGGTGGTGCCGTGGAGCAACCTCCATTTTCTTCGATGATATCGGCGGGAGGGCCTTCTCTGTATGAATCAGGCAAAGGCTGTGGAGCTTGTTTTGAGGTGAAGTGCACTGAGAATGCTGCATGCTCCAGCAACCCGGTGGAGGTGGTGATCACCGACGAGTGTCCTGGCTGTGGCTCGCCCGACAAAGTTCATTTCGATTTGAGCGGCACAGCCTTCGGCGCCATGGCTGTTTCAGGTCAGGATCAGAAGCTACGCGATGCTGGCATTTTGCAGATTCAACATAGAAGAGTGAAATGCAACTATCGTGGCACGTCATTAGCGTTCCACGTGGACGCAGGCTCCAACCCCAACTACTTCGCATGTTTGATAGAGTACGAGGACGGAGACGGAGACCTGGCCAAGGTGGAACTGAAGGAGGCTCTGGATTCTGCCACGTGGACTCCGATGCAACAGTCTTGGGGCGCCGTCTGGAAGCTCAACGCCGGCTCAGCGCTCAAAGCCCCCTTCTCCCTCCGCCTCACCACCGTCGAGTCCGGCCGCACTCTAGTGGCAAACAACGTCATCCCCGCCGGTTGGACCCCCGGCCAGACTTACCGATCACCACTTAATTTTCAGACCTAG 849 0.5395 MAFTLQLVQHPLFHLYFVSLSLCFSIFMVTPSSCFTPRKLLNASSYSPSGSDWSPAEATWYGSPTGAGSDGGACGYGGAVEQPPFSSMISAGGPSLYESGKGCGACFEVKCTENAACSSNPVEVVITDECPGCGSPDKVHFDLSGTAFGAMAVSGQDQKLRDAGILQIQHRRVKCNYRGTSLAFHVDAGSNPNYFACLIEYEDGDGDLAKVELKEALDSATWTPMQQSWGAVWKLNAGSALKAPFSLRLTTVESGRTLVANNVIPAGWTPGQTYRSPLNFQT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1050 282 SUPERFAMILY Barwin-like endoglucanases 43 179 IPR036908 -
Acco09g1050 282 PANTHER EXPANSIN-B3 28 279 - -
Acco09g1050 282 Pfam Lytic transglycolase 90 169 IPR009009 -
Acco09g1050 282 SUPERFAMILY PHL pollen allergen 181 276 IPR036749 -
Acco09g1050 282 Pfam Expansin C-terminal domain 183 265 IPR007117 -
Acco09g1050 282 PRINTS Major pollen allergen Lol pI signature 91 102 IPR005795 GO:0005576|GO:0019953
Acco09g1050 282 PRINTS Major pollen allergen Lol pI signature 231 248 IPR005795 GO:0005576|GO:0019953
Acco09g1050 282 PRINTS Major pollen allergen Lol pI signature 152 167 IPR005795 GO:0005576|GO:0019953
Acco09g1050 282 PRINTS Major pollen allergen Lol pI signature 200 215 IPR005795 GO:0005576|GO:0019953
Acco09g1050 282 PRINTS Major pollen allergen Lol pI signature 111 121 IPR005795 GO:0005576|GO:0019953
Acco09g1050 282 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576|GO:0019953
Acco09g1050 282 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 193 276 IPR007117 -
Acco09g1050 282 CDD DPBB_EXPB_N 53 175 - -
Acco09g1050 282 Gene3D - 177 281 IPR036749 -
Acco09g1050 282 PRINTS Expansin/Lol pI family signature 262 276 IPR007118 GO:0005576
Acco09g1050 282 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Acco09g1050 282 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Acco09g1050 282 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Acco09g1050 282 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Acco09g1050 282 PRINTS Expansin/Lol pI family signature 163 179 IPR007118 GO:0005576
Acco09g1050 282 Gene3D - 39 176 IPR036908 -
Acco09g1050 282 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 71 180 IPR007112 -
Acco09g1050 282 SMART dpbb_1 89 170 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1050 Acco-ChrAcco09 24073559 24075365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1050 34 280 Expansin Gene Family AT1G65680 64.372 1.90e-120 344