Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1038 ATGGAGAAGGAGAAGGCACCACAATGGATTCCTTGGTTCGTATTGATCCAACTTTTCCTGCTTGGCAACGGCGATGCTCATCCTGGTAAAGTTAATATTACAGATGCGGATGCCATTCTGGACATAATGAACACATACAACATCGACAAAACAGATTGGCAAGGTGACCCATGTGTTCCGGAGGGCTTTGCATGGGAGGGACTTCGTTGCAGTGACATCAATAGCGCTAACGCAAGGATTATCTCACTAAACTTGAGCGCCAGAAAGTTAAGAGGACAAATAGTTTCTTCATTTTCACAACTGACGGAGTTAAAGTCCTTGGATTTATCAAGGAATGCCTTGTCAGGATCCATACCGGAATTTCTTGCCAAATTGCCAAATTTGATAATCCTTAATTTGAGTGGCAACAGGCTTACAGGTTCAGTTCCCAAGGCTCTTAAAGAAAAGTCAGGATTGGAAATGAGCTTGGATGATAATCCTAGTCTTTGTTTGAGGGATCCATGTCAGAAGCACAAGTTCTTTATTCCACTTATAGCATCTGTTTCAGCTTTGACGGTTGTAATCTTGATTTCTCTAGGGATTTGGATCTTCAAACTGAAAAAACTGAAAGTGTCTACAAACCAAAACGCATTAGAACTAAGACATCGTGCTTATTCTTACAATGATGTGCTTGAGATCACTCATAACTTACAACACTTGATTGGAGAGGGTGGATTTGGAAAAGTTTATTTAGGCACCCTTAAGAATTGCGCTCAAGTTGCAGTAAAGATACTTTCTCATTCATCAGTGCAAGGTCATAGAGAATTTCGATCAGAGGTGGAACTTTTGATGGTTATTCATCATAGACACTTAGTTTCTCTGATTGGATATTGCGAAGAAGGTGACGTCAGGGCATTAATATATGAATATCTGCCTAATGGGAACCTCCAGCATCATTTATCAAGTAATAAAGGAGGTGCATTGAAATGGAAAGATCGGCTTCAAATTGCATTGGAGGCAGCATTTGGATTGGATTATTTGCACAATGGCTGTAAGCCTGCAATCGTTCACAGAGACCTTAAGGCCTCCAACATTTTGCTGGACAAGAATATGGAGGTTAAGATTGCTGACTTTGGATTGTCTAGATCTTTTGCAAATGATATTGATACTCATCTCTCAACTCATCCTGCTGGGACAATTGGTTATCTTGATCCTCAATTTCAAAATTCTGGGAACCTTACAAAAGGGAGTGATGTTTACAGTCTTGGAATAGTTCTGCTAGAACTAATGACTGGAAGACCAGCAGCAAAAAGACGACCAAATAATACCTTCACTCTCCTACTTGAATGGGTCACCCCTAAACTTGGAAGCAAGGATGATATCAAGTCCATCATTGATCCAAGGTTACAAGGACAATACAGTTTTGATTCTGCTCTGAAATTTGTCGAGTTAGCCAAGTCATGCACGGGAGTACTTGCAATTGAGAGGCCTGATATAAGTCAAGTAGTAGTTGAACTAAGAGAATGTTTGGCAATGCAGATAAGAATTGAAGGGACCAGTCACAACACCAATTCAAGCAGTTCCTTGGATATGAGTACTTTGCAATTTGATTCAAGCTTTAGTACCCCGTCTGCTAGATAG 1620 0.4037 MEKEKAPQWIPWFVLIQLFLLGNGDAHPGKVNITDADAILDIMNTYNIDKTDWQGDPCVPEGFAWEGLRCSDINSANARIISLNLSARKLRGQIVSSFSQLTELKSLDLSRNALSGSIPEFLAKLPNLIILNLSGNRLTGSVPKALKEKSGLEMSLDDNPSLCLRDPCQKHKFFIPLIASVSALTVVILISLGIWIFKLKKLKVSTNQNALELRHRAYSYNDVLEITHNLQHLIGEGGFGKVYLGTLKNCAQVAVKILSHSSVQGHREFRSEVELLMVIHHRHLVSLIGYCEEGDVRALIYEYLPNGNLQHHLSSNKGGALKWKDRLQIALEAAFGLDYLHNGCKPAIVHRDLKASNILLDKNMEVKIADFGLSRSFANDIDTHLSTHPAGTIGYLDPQFQNSGNLTKGSDVYSLGIVLLELMTGRPAAKRRPNNTFTLLLEWVTPKLGSKDDIKSIIDPRLQGQYSFDSALKFVELAKSCTGVLAIERPDISQVVVELRECLAMQIRIEGTSHNTNSSSSLDMSTLQFDSSFSTPSAR 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1038 539 ProSitePatterns Protein kinases ATP-binding region signature. 234 256 IPR017441 GO:0005524
Acco09g1038 539 ProSiteProfiles Protein kinase domain profile. 228 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco09g1038 539 FunFam Leucine-rich repeat receptor-like protein kinase 203 303 - -
Acco09g1038 539 CDD STKc_IRAK 234 499 - -
Acco09g1038 539 PRINTS Leucine-rich repeat signature 104 117 - -
Acco09g1038 539 PRINTS Leucine-rich repeat signature 125 138 - -
Acco09g1038 539 Pfam Protein tyrosine and serine/threonine kinase 230 445 IPR001245 GO:0004672|GO:0006468
Acco09g1038 539 Pfam Leucine rich repeat 82 138 IPR001611 GO:0005515
Acco09g1038 539 PANTHER OS07G0107800 PROTEIN-RELATED 32 508 - -
Acco09g1038 539 SUPERFAMILY Protein kinase-like (PK-like) 215 499 IPR011009 -
Acco09g1038 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 348 360 IPR008271 GO:0004672|GO:0006468
Acco09g1038 539 SUPERFAMILY L domain-like 58 208 - -
Acco09g1038 539 SMART serkin_6 228 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco09g1038 539 Gene3D Phosphorylase Kinase; domain 1 209 303 - -
Acco09g1038 539 FunFam PTI1-like tyrosine-protein kinase 3 304 513 - -
Acco09g1038 539 FunFam Leucine-rich repeat receptor-like kinase 34 164 - -
Acco09g1038 539 Gene3D Transferase(Phosphotransferase) domain 1 304 522 - -
Acco09g1038 539 Gene3D Ribonuclease Inhibitor 35 163 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1038 Acco-ChrAcco09 23839166 23850192 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1038 30 525 Receptor kinase-like Gene Family AT2G28970 45.977 2.60e-154 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Acco09g1038 PK_Tyr_Ser-Thr 1.2e-47 CL0016