LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco09g1017	ATGATGGAGAAGCTCCCTGGCGGTGATGGGGGACGAACTTCGTCAGCGGTAGTAATGGAGTACGAAGGTGATGTGAAGTCTGGAGGCCAAGGGTGTCGATTCGTGGCTGCTTTCTCTCTCGCTGAAGCTCTCTTTGCACTAAAAGATCGCAACTGTTTGGACTTCGGAGCCATATTTACATATGGCAACTATGACTCACGAAACCAACCTCCTGAATTTGACCTTTATCTGGGCGTCAATCTTTGGACCACAATTCAACTAGCACCTCCTTCTCCTCCCGGATTTGCAACACCTCCTAATGCATATGCTTTCCAAATCAATCCCTATGAAATAATAATGGAGAAGGATAGTAGCACAGAGATGGTACAAGTGTGCTTGATGAACACAGGACAAGGCACACCCTTCATCAACGCTATAGAATTAAGGCCATTGAACAACTCTCTCTATCCTGCTCCTCTTCCCCTTGCTATAATTGATGGAAGTAAGCCCTTTGGCACTGCAAGAATTTCCTTGGGATCTCGGCTCTCGTCGGCGTCTTGGAGCAGGTACAAAGACGATGTTTCTGGAAATAATATAAGAATCATTTCATTGAACTTGAGCTCAAGCAAACTCAGCGGAGTAATAGCCCCATCGTTTGCTAGTTTGGAAAAATTGGAGTCCTTGGATTTGTCAAACAATGAACTAACTGGTCCACTACCAGAATTTCTTGCAACTCTTCCTAATTTGAAGTTCATTAATGTTACAGAAAATAAGCTCACAGGTCCAATTCCCAAGGCTTTGAGGGAAAAGGCTAATTTGGAAATAAGAAATTTAGTTTCACTTGTTGGGTTTTGTGATGAAGACGACGTCAAAGCATTGATTTATGAATATATGGACCTTGGAGACCTCGATGGCTTGTTGTCAGAGAAAAGCCAAAATGTTTTGAAGTGGAGCCAGAGACTCCAAGTTGCTGTTGATGCAGCGAAAGGATTGGAATATCTTCATAATGGTTGTAAGACTCCTATAATTCATAGAGACTTGAAACCATCCAACATTTTATTAAATAAATCTATGGTAGCCAAAATTGCCGACTTTGGATTGTCAAGAGCATTCATAAATGAAAGAGATTCCCATCTATCAATTCAGCCAGCTGGTACTCCTAGTTACATTGATCCTGAATCTCAAAATTCTGGAATCACAAATACAAAAAATGACATTTATAGCTTTGAAATGATTCTTCTTCAACTAATCACAGGCCGTCCTCCAATAAGAAGAGAAATTGGAAATATTTGTTACATAAGTGATTGGGTTCGTCCAAAAGTTGAATGTGGGGACATTCATGGAATTATTGATCCAAGGTTGGAAGGTGAGTTCCATGTTAATTCTGCATGGAAAATTGTTGAGATAGCAATGTCATGCATTGTACCAGATTCCAAACAAAGGCCAGACATAGTCTTTGTGTTACAGGAACTAAATGAATGTTTATATTTGGAGATGGATCATGCCAAATCAAATAGCCTGTCAAGCTATCCAAACAGTCATAGTGGACTGTTTGATTCAATGAGCATCGCCTTAGCTAGGTAG	1563	0.4063	MMEKLPGGDGGRTSSAVVMEYEGDVKSGGQGCRFVAAFSLAEALFALKDRNCLDFGAIFTYGNYDSRNQPPEFDLYLGVNLWTTIQLAPPSPPGFATPPNAYAFQINPYEIIMEKDSSTEMVQVCLMNTGQGTPFINAIELRPLNNSLYPAPLPLAIIDGSKPFGTARISLGSRLSSASWSRYKDDVSGNNIRIISLNLSSSKLSGVIAPSFASLEKLESLDLSNNELTGPLPEFLATLPNLKFINVTENKLTGPIPKALREKANLEIRNLVSLVGFCDEDDVKALIYEYMDLGDLDGLLSEKSQNVLKWSQRLQVAVDAAKGLEYLHNGCKTPIIHRDLKPSNILLNKSMVAKIADFGLSRAFINERDSHLSIQPAGTPSYIDPESQNSGITNTKNDIYSFEMILLQLITGRPPIRREIGNICYISDWVRPKVECGDIHGIIDPRLEGEFHVNSAWKIVEIAMSCIVPDSKQRPDIVFVLQELNECLYLEMDHAKSNSLSSYPNSHSGLFDSMSIALAR	520

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco09g1017	520	Gene3D	Ribonuclease Inhibitor	169	271	IPR032675	-
	Acco09g1017	520	SMART	serkin_6	226	488	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco09g1017	520	SUPERFAMILY	L domain-like	176	267	-	-
	Acco09g1017	520	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	335	347	IPR008271	GO:0004672\|GO:0006468
	Acco09g1017	520	ProSiteProfiles	Protein kinase domain profile.	197	488	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco09g1017	520	PANTHER	OS07G0107800 PROTEIN-RELATED	179	263	-	-
	Acco09g1017	520	Pfam	Leucine rich repeat	196	252	IPR001611	GO:0005515
	Acco09g1017	520	FunFam	Leucine-rich repeat receptor-like kinase	177	274	-	-
	Acco09g1017	520	FunFam	Os07g0541700 protein	294	379	-	-
	Acco09g1017	520	SUPERFAMILY	Protein kinase-like (PK-like)	265	484	IPR011009	-
	Acco09g1017	520	Pfam	Malectin-like domain	57	187	IPR024788	-
	Acco09g1017	520	Pfam	Protein tyrosine and serine/threonine kinase	265	483	IPR001245	GO:0004672\|GO:0006468
	Acco09g1017	520	Gene3D	Transferase(Phosphotransferase) domain 1	291	503	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco09g1017	Acco-ChrAcco09	22478296	22484932	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco09g1017	269	503	Receptor kinase-like Gene Family	AT1G51890	48.305	2.67e-71	236

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Acco09g1017		PK_Tyr_Ser-Thr	1e-31	CL0016