Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0990 ATGCAGCAGTCCTTCACGGTTCCGGCTACAAAGAAAGCTATGGCATCATCACTCAAGAAGATGGAAAAGTTTTCTGATAATATAAAGACAAGCACATGTAGCATTTGCTTAGAAGCTTTTGATGATGAGGATAGTGACGACGTTTCAGCACTGCCTTAGAGAAAGAACACAGTTCAACACCTAAAACGAAGAGAGAAAGAATCTGTGCGCGTGCAAAATCATCAGATGCAGCAGGTCTTCACGGTTCCGGCTACAAAGAAAGCTATGGCATCACTCAAGAAGATGGAAAAGTTTTCTGATAATATAAAGACAAGCACATGTAGCATTTGCTTAGAAGCTTTTGATGATGAGGATAGTGACGACGTTTCAGCACTGCCTTGTGGCCATTTTTTCCACGATAATTGCATCGTAGGATGGCTAAAAGCAGGCGATACATGCCCATTGTGTCGCTTTCAATTGCCTACGTAA 468 0.4209 MQQSFTVPATKKAMASSLKKMEKFSDNIKTSTCSICLEAFDDEDSDDVSALPXRKNTVQHLKRREKESVRVQNHQMQQVFTVPATKKAMASLKKMEKFSDNIKTSTCSICLEAFDDEDSDDVSALPCGHFFHDNCIVGWLKAGDTCPLCRFQLPT 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0990 155 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 68 154 - -
Acco09g0990 155 SMART ringv_2 106 150 IPR011016 GO:0008270
Acco09g0990 155 ProSiteProfiles Zinc finger RING-type profile. 107 150 IPR001841 -
Acco09g0990 155 Pfam Ring finger domain 106 150 IPR001841 -
Acco09g0990 155 SMART ring_2 107 149 IPR001841 -
Acco09g0990 155 CDD RING-H2_PA-TM-RING 106 150 - -
Acco09g0990 155 SUPERFAMILY RING/U-box 106 153 - -
Acco09g0990 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0990 Acco-ChrAcco09 21872042 21875051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0990 66 154 C3H Transcription Factor Family AT1G18760 38.202 1.00e-15 69.7