Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0978 ATGCAAGTGAAGAAGAAGGATCAAGGGCCTATAACGAAAGGGCCATGGAAAGCCGACGAAGACGAAGTGCTTCTAAGCCATGTCAACAAGTATGGCCCCAGAGACTGGAGCTCCATTCGATCCAAGGGCCTTCTTCAACGCACCGGAAAATCTTGCCGTCTCCGTTGGGTCAATAAACTTCGTCCAAATCTCAAGAATGGGTGCAAATTTTCGGTGGATGAAGAGAGGGTGGTGATTGAGATGCAGGCACAATTTGGGAACAAATGGGCAAAGATTGCGTCTTATTTGCCAGGAAGAACAGATAATGATGTTAAGAATTTCTGGAGTAGTAGGCAAAAGAGGATCGCTAGGATTCTACATTCTTCACCACCACCACCATCCAAATCAAAATCCAACAGGAAAAAAAATAAAGTCCCCTGTTTCCACAATGTTCCCCCTCTGGAGGCTCCTAAGTTTAGTTCTTCATCTGAGGAAGGATCTTCATCAAAGGCTAATCAGCCACGCTCATCATCATCATCCTTTACTGAGAATTCAGAGGTCATAAAGATGGTGACATTGCCTGATCTCATGAACTCCACCACCACCAACCCCTCGACGAGTTGTTCTGACACGGTCACTTTGATCAAAGAAGAGTTTTCGACAACACCGTTCGAGAGCTACATAAGCACCGACATCATAACCTCAGGAATTGGTTTCCCTCAGATATTCCCATTCTCAATGGAAAGTCAAGATCTCTTCTTGGCCAGAGCTAATGAGCCTGCTGGTTTCATTGATGGATTAGGTTTCGGAGGAGACCCTTTGGTTGGTGATGCATCAGAACTTGGAATAGAAACAAAGATTCCCTTTTTAGGGTTTCCAAATTTCTATGATCCATCAGGAAGTTGCAGAATTGGGACACGGGATTCAAATGGTAACAACCCCACAAACCCTGAAAGCTTCTTTGATGATTTTCCAGATGATATGTTTGATCATCTTCAGCCCCCTCAGAGCCCACCATCATCATCAGAGCTATGA 1014 0.4467 MQVKKKDQGPITKGPWKADEDEVLLSHVNKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSVDEERVVIEMQAQFGNKWAKIASYLPGRTDNDVKNFWSSRQKRIARILHSSPPPPSKSKSNRKKNKVPCFHNVPPLEAPKFSSSSEEGSSSKANQPRSSSSSFTENSEVIKMVTLPDLMNSTTTNPSTSCSDTVTLIKEEFSTTPFESYISTDIITSGIGFPQIFPFSMESQDLFLARANEPAGFIDGLGFGGDPLVGDASELGIETKIPFLGFPNFYDPSGSCRIGTRDSNGNNPTNPESFFDDFPDDMFDHLQPPQSPPSSSEL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0978 337 MobiDBLite consensus disorder prediction 149 177 - -
Acco09g0978 337 MobiDBLite consensus disorder prediction 117 177 - -
Acco09g0978 337 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Acco09g0978 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 116 IPR017930 -
Acco09g0978 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Acco09g0978 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 56 IPR017930 -
Acco09g0978 337 MobiDBLite consensus disorder prediction 296 337 - -
Acco09g0978 337 Gene3D - 68 140 - -
Acco09g0978 337 FunFam MYB transcription factor 13 65 - -
Acco09g0978 337 CDD SANT 15 60 IPR001005 -
Acco09g0978 337 CDD SANT 69 108 IPR001005 -
Acco09g0978 337 SMART sant 12 62 IPR001005 -
Acco09g0978 337 SMART sant 66 114 IPR001005 -
Acco09g0978 337 MobiDBLite consensus disorder prediction 296 312 - -
Acco09g0978 337 FunFam Transcription factor GAMYB 68 140 - -
Acco09g0978 337 Pfam Myb-like DNA-binding domain 13 58 IPR001005 -
Acco09g0978 337 Pfam Myb-like DNA-binding domain 69 108 IPR001005 -
Acco09g0978 337 PANTHER TRANSCRIPTION FACTOR DUO1 4 333 - -
Acco09g0978 337 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Acco09g0978 337 Gene3D - 12 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0978 Acco-ChrAcco09 21543722 21545284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0978 1 331 MYB Transcription Factor Family AT3G60460 47.813 1.28e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco09g0978 Myb_DNA-binding 5.6e-11 CL0123