Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0960 ATGGAAAGTGATGCCCAAGACACCTTTGGTTCATCCTCTTCATCTCCATCTTCTTCTTCTTCTTTATCGTCAAACTCAGATTCTGCAGGTACCAATAAGAGAGACTCAAGAGGTGTTTCTGATCAGAATGGTGATGATAGCTGCTGCAACAACAACAACAACAAGAACAACAAGAAGATCAGAAATGAAGAAAAGGATCATAATGAAAATAACAAAAATAATGATAATGATAAGCTTCCAGCTTACAGAGGTGTGAGAATGAGGACCTGGGGAAAATGGGTTTCTGAGATTCGTGAGCCCAGAAAGAAATCCAGAATATGGCTTGGAACTTACCCTACTGCGGAAATGGCGGCTCGAGCTCACGATGTCGCGGCTTTAGCCATCAAAGGTCATTCGGCTTTCCTCAATTTCCCTCACTTGGCTTCGGAGCTTCCCCGGCCGGCCACCACCGCCCCAAAGGACATCCAAACCGCCGCCGCAAAGGCTGCAGCTACTGTGCTTGAGGTGTCAACTAATGATAATCATTGTGATCAAGCCGAGGAGGCCGGGCCAGGCCGGGCCAAGCGGGCCTCGTCATCATCGTCGGCTCAAGACCAGTCTTACTGTTCTTCAAAGGAAGAGGACGCTGCTTTGTTTGACCTACCAGATCTTTTCACTGATGGCAACAATGGCCTTTGTTCTTATGCTTCTGCTTCTTCTTCCTCTTCTTCTTCTTGGAATTTTTGTGCAGCTGATAGTCGTTTCAGGCTTGAAGAGCCATTTCTTTGGGAAAATTACTAG 780 0.4667 MESDAQDTFGSSSSSPSSSSSLSSNSDSAGTNKRDSRGVSDQNGDDSCCNNNNNKNNKKIRNEEKDHNENNKNNDNDKLPAYRGVRMRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAFLNFPHLASELPRPATTAPKDIQTAAAKAAATVLEVSTNDNHCDQAEEAGPGRAKRASSSSSAQDQSYCSSKEEDAALFDLPDLFTDGNNGLCSYASASSSSSSSWNFCAADSRFRLEEPFLWENY 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0960 259 MobiDBLite consensus disorder prediction 175 199 - -
Acco09g0960 259 CDD AP2 82 140 IPR001471 GO:0003700|GO:0006355
Acco09g0960 259 Gene3D AP2/ERF domain 81 139 IPR036955 GO:0003700|GO:0006355
Acco09g0960 259 MobiDBLite consensus disorder prediction 57 80 - -
Acco09g0960 259 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700|GO:0006355
Acco09g0960 259 MobiDBLite consensus disorder prediction 1 56 - -
Acco09g0960 259 MobiDBLite consensus disorder prediction 1 80 - -
Acco09g0960 259 SMART rav1_2 81 144 IPR001471 GO:0003700|GO:0006355
Acco09g0960 259 Pfam AP2 domain 80 131 IPR001471 GO:0003700|GO:0006355
Acco09g0960 259 SUPERFAMILY DNA-binding domain 81 139 IPR016177 GO:0003677
Acco09g0960 259 FunFam Ethylene-responsive transcription factor 2 81 139 - -
Acco09g0960 259 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Acco09g0960 259 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Acco09g0960 259 Coils Coil 50 70 - -
Acco09g0960 259 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 55 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0960 Acco-ChrAcco09 20871890 20872669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0960 72 255 AP2-EREBP Transcription Factor Family AT2G44940 55.450 3.60e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco09g0960 AP2 3.1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco09g0960 09 20871890 20872669 Acco09g0960 09 20871890 20872669 ECH