Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0953 ATGAAGGTAGCCGGAGGTGCGAAATTACATGGCTGTTGTCGCAATATGCATATTATCTCCGGGTTAAAATGCTCCCCGCGAAGTCGTAGATCGGAAAAGATGTTGGATTATGAATGGGGAAATCCGTCTACGATGATGCTCACGGGAAACGACGAAGCTGCGGCCACGGCCGCCACTGCAGCCGCCGAAGATACCGAACAAACGCACCGGCAAATCTTCGACCATTACAACGCTCACCCGTTCTTACCCGACCACCTTATTTCTCAAGCTCCACCGGCACCTACACCGACCACCACCTCCTCCGATTTCTCTCTCTCACACCACCATCAACAATTTCACTCGCAACCCCATCACCACCATATATACCACCACCACCAACAACAACATTCTCTCTTCGACACACGCGCCTTCTCCGTCGCGTCATCGTCTCATTTCCCTCCTCCACCACTGCCACCGCCACCTCATTCCATGTTCTCCCTTGACCCACTCCCTCCGCTCAACGCCGGCAGCTGCGGGCCTGGTGGTGGGGGGTTTCTAGTGGTACCAAAGTCCGAAGATGTGGGCCGGTCCGCGGACTTCTCGGCGTCTCGAATTGGACTCAACCTCGGCGGCCGGACGTACTTCTCCAGCTCCGAGGACGACCTCGTGAACCGGTTCTACCGTCCGTCCAGGCCGTTTGAACCGGGTTCGTCGATGTTGTACAGCAACAACTCGCCGAGATGCCAAGCCGAGGGATGCAATGCTGATCTCTCACACGCTAAGCACTATCACCGCCGACATAAGGTGTGCGAGTTTCACTCCAAAGCTGCCACCGTGATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGTAGCAGGTTTCATCTTCTTTCGGAGTTTGATAATGGAAAACGGAGCTGCAGGAAAAGATTGGCAGATCATAATCGTCGCAGAAGAAAAACTCAACAACCACCTCATCAAGAAATCCAGAAATCTCACCTCGAAAAGCCACGCAATTCTACTTTGGACATTGCAGCAAAAGGGTCCTCGCCGGATTCAGGAACCCAGTCATCATCATCGGTGACGGTGGCGGTGTCCCCGCCGGATTATTTCCAGCAAAAGCCATATCATCAAAACACAACAGCATCAAGGACACTGTTTTTCTCAAGTGGGTAG 1158 0.5363 MKVAGGAKLHGCCRNMHIISGLKCSPRSRRSEKMLDYEWGNPSTMMLTGNDEAAATAATAAAEDTEQTHRQIFDHYNAHPFLPDHLISQAPPAPTPTTTSSDFSLSHHHQQFHSQPHHHHIYHHHQQQHSLFDTRAFSVASSSHFPPPPLPPPPHSMFSLDPLPPLNAGSCGPGGGGFLVVPKSEDVGRSADFSASRIGLNLGGRTYFSSSEDDLVNRFYRPSRPFEPGSSMLYSNNSPRCQAEGCNADLSHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPPHQEIQKSHLEKPRNSTLDIAAKGSSPDSGTQSSSSVTVAVSPPDYFQQKPYHQNTTASRTLFFSSG 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0953 385 ProSiteProfiles Zinc finger SBP-type profile. 238 315 IPR004333 GO:0003677
Acco09g0953 385 MobiDBLite consensus disorder prediction 307 385 - -
Acco09g0953 385 MobiDBLite consensus disorder prediction 142 161 - -
Acco09g0953 385 Gene3D - 233 302 IPR036893 GO:0003677|GO:0005634
Acco09g0953 385 MobiDBLite consensus disorder prediction 316 334 - -
Acco09g0953 385 FunFam Squamosa promoter-binding-like protein 14 232 302 - -
Acco09g0953 385 MobiDBLite consensus disorder prediction 144 160 - -
Acco09g0953 385 MobiDBLite consensus disorder prediction 337 385 - -
Acco09g0953 385 Pfam SBP domain 241 314 IPR004333 GO:0003677
Acco09g0953 385 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 229 355 IPR044817 GO:0003677
Acco09g0953 385 SUPERFAMILY SBT domain 239 318 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0953 Acco-ChrAcco09 20585380 20588138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0953 34 288 SBP-box Gene Family AT1G02065 45.211 1.71e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Acco09g0953 SBP 1.2e-30 No_clan