Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0918 ATGAATCTATCCCACCCTTTAATCGATGCTCAAAACCTTCATGCTTTGATACCAAGAATCATGTCCACAGCTCAAGGATGGTTTAATGATAATTATCCTTCACCTTATGTTCTTGAAGGTGATGGGATCATTGTATTCCCTTTAGCTATTGACGTTATAGTTAGATTTGCTATGAGTATGGATTTTGTGAATTTGATGGGAGCAATTAGTATGGAGGAGTCCATGCAAGAGATTAACCTAGTTCCTACCTCTGAAGAAGCCATCCAATCCCTCAACACAATCAAGCTTGTAGAAAATACTAGCAATGAGCAATGTTGTGTTTGTCTTGAAGATTTTGGTGAAGTTGAGATCTCAACAATGCCATGTCATCATAATTTTCACAAAAGTTGTATTATTAAGTGGCTAAAAACAAGTCATTTATGTCCTTTATGTCGGTATCCAATGCCTGCAGCCAATGATGCTTAG 465 0.372 MNLSHPLIDAQNLHALIPRIMSTAQGWFNDNYPSPYVLEGDGIIVFPLAIDVIVRFAMSMDFVNLMGAISMEESMQEINLVPTSEEAIQSLNTIKLVENTSNEQCCVCLEDFGEVEISTMPCHHNFHKSCIIKWLKTSHLCPLCRYPMPAANDA 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0918 154 ProSiteProfiles Zinc finger RING-type profile. 105 145 IPR001841 -
Acco09g0918 154 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 72 149 - -
Acco09g0918 154 SMART ring_2 105 144 IPR001841 -
Acco09g0918 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 151 IPR013083 -
Acco09g0918 154 Pfam Ring finger domain 104 145 IPR001841 -
Acco09g0918 154 SUPERFAMILY RING/U-box 95 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0918 Acco-ChrAcco09 18728071 18728535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0918 70 145 C3H Transcription Factor Family AT5G45290 42.683 5.19e-15 69.3