Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0916 ATGTGGACCCCTCCGCAATCATATTTTTACCATGTTTCTGGTCAACCTGATCATCCTGAAGCCTTCCGAAACCTTCCTATCCAAAGCCATCACAACACTGGGAGACTTAATTTTATTGTCAAACTTTGTGTTTGTTTCGAGCTTAGTTTTCGTTCGGGGGAGAGAGTTGGGAGCACAAGGGCTTATTCACCACCAGTTTCCTCTCATTACATTTCATGTGCAGAATTTTTTCGAACTGGATCGATCTTACTTCAAACGAATCTATCCCACCCTTTAATCCATGCTCAAAACCTTCGTGCTTTGGTACCAAGAATCTTGTCCATAGCTCAAGGATGGTTTAATGATAATTATCCTTCACCTTATGTTCTTGAAGGTGATGGGATCATTGTATTCCCTTTAGCTATTGATGTTATAGTCAGATTTGCTATGAGTATGGATTTTGTGAATTTGATGGGAGCAATTAGTATGGAGGAGTCCATACAAGAGATTAACCTAGTTCCTGCCTTTGAAGAAGCCATCCAATCACTCAACACAATCAAGCTTGTAGAAAATACTAACAATGAGCAATGTTGTGTTTGTCTTGAAGATTTTGGTGAAGTTGAGATCTCAACAATGCCATGTCATCATAATTTTCACAAAAGTTGTATTATTAAGTGGCTAAAAACAAGTCATCTATGTCCTTTATGTCGGTATCCAATGCCTGCAGCCAATGATGCTTAA 720 0.3889 MWTPPQSYFYHVSGQPDHPEAFRNLPIQSHHNTGRLNFIVKLCVCFELSFRSGERVGSTRAYSPPVSSHYISCAEFFRTGSILLQTNLSHPLIHAQNLRALVPRILSIAQGWFNDNYPSPYVLEGDGIIVFPLAIDVIVRFAMSMDFVNLMGAISMEESIQEINLVPAFEEAIQSLNTIKLVENTNNEQCCVCLEDFGEVEISTMPCHHNFHKSCIIKWLKTSHLCPLCRYPMPAANDA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0916 239 Pfam Ring finger domain 189 230 IPR001841 -
Acco09g0916 239 ProSiteProfiles Zinc finger RING-type profile. 190 230 IPR001841 -
Acco09g0916 239 SUPERFAMILY RING/U-box 179 234 - -
Acco09g0916 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 99 234 - -
Acco09g0916 239 SMART ring_2 190 229 IPR001841 -
Acco09g0916 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 236 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0916 Acco-ChrAcco09 18602813 18603532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0916 155 237 C3H Transcription Factor Family AT1G18760 36.471 1.95e-13 65.5