Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0910 ATGATGAAAGACAAACAGGCTCAAGGAATCGTCCTACTTCACGTGCTAGACCCTGAGCGAGTTGCTTTCGTAAAGGATCAACTGACTTTAGTTTCTGCGAAATCGAAATGGCTTCAAGTTTCCGATGCTGATTATCTCTTGATTGATCGACCAGTTTGGGTTTCTGATTTTTCATACTTCTCTGCGTCCGAAGAGCTATTAAACTCAACAATGCCCAGAAAGAGACGTATACATCAATTGAAGCATCCATTTGATTCTCACCCATTTGAGGCAATTCTCCAGGGGTCATGGCAAGCTTTGAGGTACCTAGCAATTGAAAGAGGAACAATGGTCTTACATTTTAAAGATAATAACTATGTGGTCAGGGAGAAAGCTCCTATTTCAGACATTCGGATAAGGTCTAGGAAAGCAACTGTATCAGATTGCTCCAGCTTTCTAAGACCTGGAATTGACATATGTGTACTTTCTTCCTTTCAATCTACTAATGGCTCAGATAAAAAAAGTCTTAATCCTGTGTGGGCTGATGCTAAAATAAGTTCTATACAGAGAGAGCCACATGAACCTGGGTGCTCCTGTCAGTATTATGTGAACTTTTATGTTAATCAAGGTTGTATGGGTTCTGAGGTAAGAACTCTGAGTAAGGAGATCAAAGTTGTTGGAATAAATCAAATTTCTATTCTCCAAAGGCTTGGGCATAGTCCTTGTGAAGATCATCACTATCGGTGGGATTCATCTGAGGACTGGCATGCAGTACCACAAACTAAACTGCTTACAGGGAAATTTTTATCTGATATTTCATGGTTAATTGTCTCATCAGTTTTAAAGAAGGTTTCATTTTGTGTGAGATCTGCAGATAACAAGATTGTGTATCAAATCATGGGGGGTGATGATATTAGCTCCCTATTGGATGTTGTAAATTTCAGAATGGACAACAACATGTTAGTACCCATTGTTTCCCAAGTTATTTCATCTGACACTGTTAAGGTTGATGATACAGATGACTCCCATAAAGATAAAGCAATTCCATCCTATAGTCCTGAGGGTTTGCGTCGTTCTAAACGCCGGAATGTACAACCCGAGCGCTACCTTGGCTGTGATGAGACTCATGTGTTGGATGTTGGTTTTGTTCGTACTAGGCCATACAAGATGGACACCCGAAAAGATGATATTGAGGATGATGAATTGTCAATGCCATTGTCATCTCTGATTGGTTTGCAAAAATGTTCTGGAGTGAAGGGCTATGACAATGAACTAAATTCTGATAAGATGAAGTCCTACAACAAGCTTAAAGTGTATAAAAGGAGGCCTAAATCTAAGGAGGTGAATTCAGGTGATGCCAATGAAAATGAAACTCAATCTCAACTTGCCATTGTTCCTGTTCCTCTAGAATGTGATCCTATTAACATTGAGCATTTTGATTCCAATGCCATGGTCTCTAAGCTTTACACACAAAGACATGTTGAATGTCCTTCCAAATATTATCACATGATGGGTAGTCCTGAACCAAAGAGGAATGGTATGGATTTGTTAACTTTTGAATCCTATAATCATCCTTCAAAGATTCCTGATCTTGAAGAGATTGATGATATTGCTTCCCGACGTCATTATAATCATGGCATTCCGAAATTGAAGGGGAAGAATTCATGTGGTTTTGATGATATGCATTTTGAAGGCAAGTGGGAAGGGATAAATTCCAATAAAGCATTTCAAGGGAGAAAATATCATTCAACAATTTCAAGAGTCAGACAGTCTGATGAAGAAAGAACTTATAAAGCTAGGTCCTTAAGTGCGGGTGCCTACAAAGAATTGATAGACTCATATTTAAAGAATATGAATGCAAAACCGTCAAAAGCAGAGCCTCCTATTACTGAGCAGTGGATACAATTCAAGGAAACAAGTAACTTCGGACAAAAGAGGGAAACAAAGGCATCCTCAGTAGAGGATGAGGAAGAAACTGATGAACTGGATATACTGTGGAGAGAAATGGAAGTTTCATTGGCATCAAGTTATGTTGAAGAAGGCCCAGAGGATTCAGGTGCCCCAGCCTTTACTGAGGCATGGGAAAATACCGATTCACTTTGTCGCCATGATTATAGAATGAATGAAGAAATTGGAATTTACTGTGTCTTATGTGGCATTGTCAGTACAGAGATTAAAGATGTTTTGCCACCCTTTTTAGAACGTTCGTGGCACTATGAGGAGAAGCCACACTGTGGAGAAGGTTCAGGACCAGAACCAAAGGCTGATGAAAATGATGATTTTCATCTTTTGTTGACTGATGCTTTGCCTGATCAACCTATAACTGGAGAAAATGATAATGTATGGGCGTTAATTCCTGAACTTAGGTGGAAGTTGCACATCCACCAAAAAAAGGCTTTTGAATTTCTTTGGAAAAATATTGCTGGGTCTATGGACCCCACACTTATGGAAGCAGCATCCAAAAAAAGAGGTGGTTGTGTGATATCTCATGCTCCTGGAGCTGGAAAAACATTCCTTATTATTGCATTTCTTGTGAGCTACTTGAAGTTATTCCCAGGGAAGCGACCATTGGTTCTTGCTCCGAAGACAACACTTTATACATGGTATAAAGAATTTATTAAATGGAACATTCCTATTCCAGTGTATCTAATTCATGGTCGTAGAACCTACCGAGCGTTCAAACAGAATAAAGTGGTTTTTCATGGTGGTCCAAAGCCTACTGATGATGTCAAGCATATTTTGGATTGCCTGGAAAAGATACAAATGTGGCATGCACACCCAAGTGTTCTAGTCATGGGTTATACTTCGTTTTTAACATTGATGCGAGAGGATTCAAAGTTTTCTCACAGAAAGTACATGGCCAAAGTATTAAGGGAAAGTCCTGGTATTCTTATACTGGATGAAGGGCACAATCCTAGAAGCACAAAATCAAGGTTGAGGAAAGTTTTGATGAAAGTACAGACAGAATTGAGAATATTACTTTCTGGTACATTGTTCCAGAACAACTTCTGTGAATACTTCAACACTCTTTGCTTGGCGAGGCCAAAATTTGCTGATGAAGTGTTGAAAAAACTGGACCCTAAATACAAGAGAAAATTGAAAGGAGCAGGGAAAGCACGTCATTTAATAGAGGCGCGAGCTAGAAAATACTTCTTGGATAATATTGCAAAAAAAGTTGACTCAAAGGATGAAAAAGAGCAAATGCAGGGTCTGAACATGTTGAGAAAGATGACCAGTGGTTTTATAGATGTTTATGAAAATGGGAATTCAGAGGATCTTCCTGGTTTACAAATCTATACATTGTTGATGAATACTACTGATATACAGCATGAAATTTTGAAAAAACTGCAGAAGAAAATGTCTGCGTGCAATGGATATCCTTTGGAGTTAGAGCTTTTGATAACCCTTGGATCGATACATCCTTGGTTAGTCAAAACAGCCGTATGTGCTGAAAAGTTTTTCTCTATAGAGCAATTGATGGAGCTAGAGAAATGGAAGTATGATTTGAAAAAAGGGTCAAAAGTGAAATTTGTTTTGAGCCTGGTCTATCGCGTTGTAAGGAATGAGAAGATTCTAATGTTTTGCCATAACATCGCACCTGTGAGATTATTTGCAGAATTATTTGAGAAGTTCTTTGGATGGTATAGAGGTCGAGAAGTCTTAGTTCTTACTGGGGAGCTAGAGCTCTTTGAACGTGGAAGGATAATGGATAAGTTTGACGATCCTAACGGACCATCAAAGATACTTCTTGCTTCAATTTCATCTTGTGCTGAAGGCATTAGTTTGACAGCAGCATCTCGGGTGATTTTGTTGGATTCAGAATGGAACCCATCCAAGACAAAACAGGCTGTTGCACGTGCTTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTACCAGCTGCTGGCAACTGGCACATTGGAGGAAGATAAGTATCGAAGAACCACCTGGAAAGAGTGGGTTTCCAGCATGATTTTTAGCGAAGAATATGTTCAGGACCCTTCCCGATGGCGAGCAGAAAAGATTGAAGATGACATACTGCGAGAAATGGTTGCAGAAGACCGCTCCAATTCATTCCATATGATTATGAAGAATGAAAAGACGTCCACGAACTGA 4095 0.3934 MMKDKQAQGIVLLHVLDPERVAFVKDQLTLVSAKSKWLQVSDADYLLIDRPVWVSDFSYFSASEELLNSTMPRKRRIHQLKHPFDSHPFEAILQGSWQALRYLAIERGTMVLHFKDNNYVVREKAPISDIRIRSRKATVSDCSSFLRPGIDICVLSSFQSTNGSDKKSLNPVWADAKISSIQREPHEPGCSCQYYVNFYVNQGCMGSEVRTLSKEIKVVGINQISILQRLGHSPCEDHHYRWDSSEDWHAVPQTKLLTGKFLSDISWLIVSSVLKKVSFCVRSADNKIVYQIMGGDDISSLLDVVNFRMDNNMLVPIVSQVISSDTVKVDDTDDSHKDKAIPSYSPEGLRRSKRRNVQPERYLGCDETHVLDVGFVRTRPYKMDTRKDDIEDDELSMPLSSLIGLQKCSGVKGYDNELNSDKMKSYNKLKVYKRRPKSKEVNSGDANENETQSQLAIVPVPLECDPINIEHFDSNAMVSKLYTQRHVECPSKYYHMMGSPEPKRNGMDLLTFESYNHPSKIPDLEEIDDIASRRHYNHGIPKLKGKNSCGFDDMHFEGKWEGINSNKAFQGRKYHSTISRVRQSDEERTYKARSLSAGAYKELIDSYLKNMNAKPSKAEPPITEQWIQFKETSNFGQKRETKASSVEDEEETDELDILWREMEVSLASSYVEEGPEDSGAPAFTEAWENTDSLCRHDYRMNEEIGIYCVLCGIVSTEIKDVLPPFLERSWHYEEKPHCGEGSGPEPKADENDDFHLLLTDALPDQPITGENDNVWALIPELRWKLHIHQKKAFEFLWKNIAGSMDPTLMEAASKKRGGCVISHAPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWNIPIPVYLIHGRRTYRAFKQNKVVFHGGPKPTDDVKHILDCLEKIQMWHAHPSVLVMGYTSFLTLMREDSKFSHRKYMAKVLRESPGILILDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFADEVLKKLDPKYKRKLKGAGKARHLIEARARKYFLDNIAKKVDSKDEKEQMQGLNMLRKMTSGFIDVYENGNSEDLPGLQIYTLLMNTTDIQHEILKKLQKKMSACNGYPLELELLITLGSIHPWLVKTAVCAEKFFSIEQLMELEKWKYDLKKGSKVKFVLSLVYRVVRNEKILMFCHNIAPVRLFAELFEKFFGWYRGREVLVLTGELELFERGRIMDKFDDPNGPSKILLASISSCAEGISLTAASRVILLDSEWNPSKTKQAVARAFRPGQQKMVYVYQLLATGTLEEDKYRRTTWKEWVSSMIFSEEYVQDPSRWRAEKIEDDILREMVAEDRSNSFHMIMKNEKTSTN 1364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0910 1364 MobiDBLite consensus disorder prediction 328 355 - -
Acco09g0910 1364 Gene3D - 1140 1358 IPR027417 -
Acco09g0910 1364 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1170 1331 IPR001650 -
Acco09g0910 1364 SMART ultradead3 781 1025 IPR014001 -
Acco09g0910 1364 Pfam Helicase conserved C-terminal domain 1167 1283 IPR001650 -
Acco09g0910 1364 Gene3D - 765 1052 IPR038718 -
Acco09g0910 1364 Pfam SNF2-related domain 791 1080 IPR000330 GO:0005524|GO:0140658
Acco09g0910 1364 CDD DEXHc_ATRX-like 785 1010 - -
Acco09g0910 1364 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 810 1009 IPR014001 -
Acco09g0910 1364 SMART helicmild6 1195 1284 IPR001650 -
Acco09g0910 1364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1085 1342 IPR027417 -
Acco09g0910 1364 CDD SF2_C_SNF 1159 1295 - -
Acco09g0910 1364 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 121 1363 IPR044567 GO:0080188
Acco09g0910 1364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 756 1011 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0910 Acco-ChrAcco09 18481803 18489931 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0910 1210 1302 RAD5 or RAD16-like Gene Family AT5G05130 38.947 9.52e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco09g0910 SNF2_N 5.2e-16 CL0023