Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0886 ATGCCCCATGAGAAAGGATTACGTTATGATGGCATCTGCCAAATTGAAAAAGTGTTGGCGAAAACAAGAAATGCAGATCGCCCCCGAGATATGCCTGTAATTCCTGAGTTGAAAAATGTTACAGACTTGGTAGAAAGGAAGGGGAATGCAGAATTTGGCTGCCTTATCTGTAAAGAGGTTATGCCTACTCCTGTGACGACACCCTGTGCACATAATTTTTGTAAGTTATGTTTGGAGGGAGCCTTCGCAGAGTTGTTGGGCTTAATTGAATTATTGAAAGCTGAGGCGGCTAAAGAAAATGGAAAGCGAGGTGAGCAAGAAGATGGATCAAAGGTAGACTCATAA 345 0.4261 MPHEKGLRYDGICQIEKVLAKTRNADRPRDMPVIPELKNVTDLVERKGNAEFGCLICKEVMPTPVTTPCAHNFCKLCLEGAFAELLGLIELLKAEAAKENGKRGEQEDGSKVDS 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0886 114 ProSitePatterns Zinc finger RING-type signature. 69 78 IPR017907 -
Acco09g0886 114 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 107 IPR013083 -
Acco09g0886 114 ProSiteProfiles Zinc finger RING-type profile. 54 78 IPR001841 -
Acco09g0886 114 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 42 84 IPR045134 -
Acco09g0886 114 Pfam RING-type zinc-finger 54 78 IPR027370 -
Acco09g0886 114 SUPERFAMILY RING/U-box 50 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0886 Acco-ChrAcco09 17236433 17238943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0886 5 90 C2H2 Transcription Factor Family AT5G39550 30.573 2.87e-15 68.6