Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0863 ATGCCACCGAGGACGGTGAAGAGAGGGGCTGCATCGGCGGCCCGGAGAGGGGGCAGAGGTGGCCGAGGAACGCCGAAGGCTGCCCAGAATCAGCAGAATCTTGATTCTGCACAAGATGTTGTGAAGCATGAAGAAAAGCAGGTCGTTGAGGACAAGCCCGTTGTCGAGGAGAAGCCTGTCGTTGAGGAGAAACCCGTTGAAGAGAAACAAGTAGGCATTGATATGAATCAGATGGCTTTTGATATTAACCAAGTAGCCTCAGAGGCCGAAGAAGCGAATCTCGTTACAAATGGGTCTGCTGCTTTGAAAAACGACGAAGAGGAGGTTAGGGAGTCCATAGATGAATATGAGAAAGATGAACGCTTGGATTTGGAGGATAATGATCCAGAGTATGAAACAGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAGCATGATGATGTTCAAGAGGTAGGAGATGAGATAGAGGAAGAACCTGATGAGAATTTAGGTGAAGAAGAGGGTGATATAGTTGAGGAGGAGGTGGAAGACGTTCATGGAGAACTTGAGGGTGAAGAGGATGATGAACATCCTGGAGAGGAGCATGAGCATGAGCATGAGCATACGGAGAATGCTGATGTAGAAGAAGACGAACACCATGAAGGTTTGAAAGAGAGGAGAAAGCGCAAGGAATTTGAAGTATTTGTTGGAGGCTTAGATAAGGATGCTACTGAGGATGATCTGAGGAAGGTTTTTAGTGCAGTTGGTGTGGTTACTGAAGTGAGGCTTATGATGAATCCTCAGACTGAAAAGAATAAGGGTTTTGCATTCTTGCGATTTGCAACGGTGGAACAAGCTAAACGAGCTGTAACAGAGCTAAAAAATCCAGTGATTAATGGAAAACAATGTGGGGTAACCCCCAGTCAGGACAGTGACACCCTCTTTTTGGGTAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTAAAGCATTATGGAGTTGACAATGTGGAGGATCTGACTTTGGTAGAAGATAGTAATAATGAGGGAATGAACCGTGGATTTGCCTTTTTAGAATTTTCATCTCGGTCAGATGCTATGGATGCCTTTAAGCGATTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAGGCCTGCAAAGGTTTCCTTTGCAGATTCTTTTATTGATCCGGGTGATGAGATTATGGCGCAGGTCAAAACTGTATTTATTGATGGTTTGCCTCCATCATGGGATGAGGATCGTGTGCGGGGTCTTCTTAAGAGATTTGGAGTGATTGAGAAGATTGAGCTTGCCAGAAACATGCCTTCTGCTAAGAGGAAAGACTTTGGATTTGTTACCTTTGATACCCATGATGCCGCTGTGACATGTGCTAAAAGCATTAATAATTCTGAGATTGGTGAAGGAGACAGTAAGGCAAAAGTTAGGGCAAGATTATCGAGACCACTTCAGAGAGGCCATGGAAAACATGGTAGTCGAGGGGATTTTAGGTCTAGTCGTGCCTCAGGAAGAGTCACAAGACCTTCATGGAGTCGTCCTCCGCCTCGTAGTTTACCTGCCCGTGGGGTACGGGGTGTTAGTAGTCGTGTTCCTCCAGTCAGGCCTATTAGTGTAAGAGATAGACGTCCAACCATGCCCATGACAGTAAGAGCTAGGCCAGTGGCTCCTCCAGCTAGATCTTATGATAGGAGACCGGCTGCTCCTGCATATCCAAAGAGTAGCATGAAGAGAGATTATGGTCGCCGTGAGGATTTGCCGCCACCAAGAAGTAGAATAGCTGCAGATTATAGCTCTCGGGTAGCCTCTGAGAGACGCCCATCTTACAGGGATTATCCAGCTCGTGGCCCTACCTACTCTGAGCTTCCTAGAAGTACTTCATCTCGTGTGGCACCTAGGAGGGGTTATGTGGACGATGGCTATGATCAAAGATTTGAAAGGCCTCCTCCACCACCGCCCCCACATCCAAGTTACCGTGAAGGACGCCCTCGTGACTATGATACTCTGTCTGGCTCAAAACGGCAATATGCTGCCATAGATGATGTTCCACCACGATATGCTGACAGTGGTGCTCGCCAATCTAGAGCTCGATTGGACTATGACTATGGTGGTAGTACCTCACAGTATGGCGATGCTTATGGGGATAGACTTGGAAGATCTAGTATGGGCTATAGTGGTGGCAGGAGTTCTATGTCAAGTCAAGACTCGCATGGGATGTATAGCAGTCGTCAGGGCGTGAGTTACAGTGGAGGTTCTTTTGGCAGCAGTGATGTTGGTGGCATGTACTCCTCCAGTTATGGTGGTGATTATATGTCTCGTGGAAATGATGTTGGTGGTGGCTCATACTCATCAGTGTATCCTGGCAGAGGTGTGGGTGGTAGTGGCAGTTACATGGGTGGTAGTGGGTCTGGGTCTTATTATTGA 2436 0.4684 MPPRTVKRGAASAARRGGRGGRGTPKAAQNQQNLDSAQDVVKHEEKQVVEDKPVVEEKPVVEEKPVEEKQVGIDMNQMAFDINQVASEAEEANLVTNGSAALKNDEEEVRESIDEYEKDERLDLEDNDPEYETEEYGGVDYDEKEIEHDDVQEVGDEIEEEPDENLGEEEGDIVEEEVEDVHGELEGEEDDEHPGEEHEHEHEHTENADVEEDEHHEGLKERRKRKEFEVFVGGLDKDATEDDLRKVFSAVGVVTEVRLMMNPQTEKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPPSWDEDRVRGLLKRFGVIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNSEIGEGDSKAKVRARLSRPLQRGHGKHGSRGDFRSSRASGRVTRPSWSRPPPRSLPARGVRGVSSRVPPVRPISVRDRRPTMPMTVRARPVAPPARSYDRRPAAPAYPKSSMKRDYGRREDLPPPRSRIAADYSSRVASERRPSYRDYPARGPTYSELPRSTSSRVAPRRGYVDDGYDQRFERPPPPPPPHPSYREGRPRDYDTLSGSKRQYAAIDDVPPRYADSGARQSRARLDYDYGGSTSQYGDAYGDRLGRSSMGYSGGRSSMSSQDSHGMYSSRQGVSYSGGSFGSSDVGGMYSSSYGGDYMSRGNDVGGGSYSSVYPGRGVGGSGSYMGGSGSGSYY 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0863 811 CDD RRM_SF 230 301 - -
Acco09g0863 811 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 405 487 IPR000504 GO:0003723
Acco09g0863 811 Coils Coil 141 161 - -
Acco09g0863 811 FunFam Heterogeneous nuclear ribonucleoprotein Q 309 391 - -
Acco09g0863 811 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 23 811 - -
Acco09g0863 811 MobiDBLite consensus disorder prediction 484 673 - -
Acco09g0863 811 SUPERFAMILY RNA-binding domain, RBD 306 472 IPR035979 GO:0003676
Acco09g0863 811 CDD RRM_SF 407 472 - -
Acco09g0863 811 Coils Coil 99 122 - -
Acco09g0863 811 Gene3D - 395 513 IPR012677 -
Acco09g0863 811 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 157 308 - -
Acco09g0863 811 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 298 IPR000504 GO:0003723
Acco09g0863 811 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 407 472 IPR000504 GO:0003723
Acco09g0863 811 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 376 IPR000504 GO:0003723
Acco09g0863 811 CDD RRM_SF 310 388 - -
Acco09g0863 811 FunFam RNA recognition water-stress protein1 395 516 - -
Acco09g0863 811 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 306 IPR000504 GO:0003723
Acco09g0863 811 SMART rrm1_1 406 481 IPR000504 GO:0003723
Acco09g0863 811 SMART rrm1_1 229 302 IPR000504 GO:0003723
Acco09g0863 811 SMART rrm1_1 309 388 IPR000504 GO:0003723
Acco09g0863 811 MobiDBLite consensus disorder prediction 580 594 - -
Acco09g0863 811 Gene3D - 169 303 IPR012677 -
Acco09g0863 811 MobiDBLite consensus disorder prediction 728 748 - -
Acco09g0863 811 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 392 IPR000504 GO:0003723
Acco09g0863 811 MobiDBLite consensus disorder prediction 118 194 - -
Acco09g0863 811 MobiDBLite consensus disorder prediction 97 221 - -
Acco09g0863 811 MobiDBLite consensus disorder prediction 1 46 - -
Acco09g0863 811 Gene3D - 308 391 IPR012677 -
Acco09g0863 811 SUPERFAMILY RNA-binding domain, RBD 224 306 IPR035979 GO:0003676
Acco09g0863 811 Coils Coil 27 47 - -
Acco09g0863 811 MobiDBLite consensus disorder prediction 103 117 - -
Acco09g0863 811 MobiDBLite consensus disorder prediction 195 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0863 Acco-ChrAcco09 16716680 16721921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0863 223 486 Eukaryotic Initiation Factors Gene Family AT1G49760 24.080 2.01e-14 75.5