Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0778 ATGGGTTCTTCTTTTCTGAACTCTCCGTATAAGCCATGGACGCCCGCTGATGCTGTTCTTCGAGATTGTTCTCAAGGAATCTGCAGCTTCTATTGCCCTCAATGGTGCTCTGTCATCTACCCTCCTCCTCCTTTACCTTCTCTCACCGCCATCGGGGTGTCTGCCACCGCCGGTGACGACGACGACGACGACTCTTCATTCCGACTCTCTCCTCTCATAGTCGCTCTCATCAGCATCCTAGCAAGTGCTTTCGTTTTAATCACTTACTACACCATCATCTCTCGATTCTGTACAAGACGATCCCGAATCCACGAAAACGACACCAACCAGTGGGTAAACGACAATGACGAGTCGGCGATTCAAACCGCTAATACCGGCGGCGGCACCGGAGGCTTGGACGACGCCGTTATCAGATCAATCGCTGTCTGTAAGTACAAGAAAGGAGGTGGATTAGTCGAAGGCACGGATTGCTCTGTGTGTCTCAGCGAATTCGAAGATTGTGAGAGTCTAAGATTGTTGCCCAAATGCAACCACGCGTTTCATCTTCCTTGTATCGATACATGGTTGAGATCGCATTCGAGTTGTCCTCTATGCAGATCTAATATTGTCATATCCAACACTTGCTCGTCTTCTTCCTCTGGCAATTTACCGAATCAGGAAGCTTTGCGAACAAACAGTGTGAATGTGTCTGCATTGGAACATCAGTACATGAACGATACAGTGATAGTGATTCAGGGTTCAGAACATGAAATTCAGGTCGGTTTTGTAGGGAATTTGGAGGAGAGGAATGCGATTGAATCGAATCAAGGAAGATTGTTGTTGGTTGCTGATGTATTGAGAATTAGTGAAGATGATGAGGATGAGGATGAAGAAATCGAGATGGGATCGTCGAAGCAAAATCGGAGAGGAAAGTGA 915 0.4699 MGSSFLNSPYKPWTPADAVLRDCSQGICSFYCPQWCSVIYPPPPLPSLTAIGVSATAGDDDDDDSSFRLSPLIVALISILASAFVLITYYTIISRFCTRRSRIHENDTNQWVNDNDESAIQTANTGGGTGGLDDAVIRSIAVCKYKKGGGLVEGTDCSVCLSEFEDCESLRLLPKCNHAFHLPCIDTWLRSHSSCPLCRSNIVISNTCSSSSSGNLPNQEALRTNSVNVSALEHQYMNDTVIVIQGSEHEIQVGFVGNLEERNAIESNQGRLLLVADVLRISEDDEDEDEEIEMGSSKQNRRGK 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0778 304 FunFam RING-H2 finger protein ATL54 132 205 - -
Acco09g0778 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 207 IPR013083 -
Acco09g0778 304 SMART ring_2 157 198 IPR001841 -
Acco09g0778 304 MobiDBLite consensus disorder prediction 284 304 - -
Acco09g0778 304 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Acco09g0778 304 PANTHER RING-H2 FINGER PROTEIN ATL16 63 261 IPR044600 GO:0016567|GO:0016740
Acco09g0778 304 Pfam Ring finger domain 156 199 IPR001841 -
Acco09g0778 304 SUPERFAMILY RING/U-box 152 205 - -
Acco09g0778 304 CDD RING-H2_EL5-like 156 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0778 Acco-ChrAcco09 14266267 14267181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0778 12 304 C3H Transcription Factor Family AT3G03550 43.478 1.31e-64 205