Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0732 ATGGACGGATATAAACTGTTTATTTGTATTACTGGGAATATCTCACTGGCAATCCTATCCCATTTCACTGCAGGCACAAACGCAATGCTGCTGGGGCAAGCTTCTCCTGTTAGCTTTAGAACCAAACCCAGTTGCTTCGAATTGCAGATTCAAAGCCATGCGCGTCTATTATCCTTTGCTCAGATTTGCTTCTGTGACACCTCATGTACGAAAGTGCTACGCACAAGTGTTGGGAATGCATTTCTCGTTAGAGCTGGGCATTCTTCCGCACCCAAAGACGTTGTTTCTTGGAACCCTAACACCGCCAACGATGGTTCGAGCTCAAATGTAGAGAATTTATCAGATATAACCATTGTAACTGAAGGCTTTGAGAGTGAATCGGTTATTACAAATAGTGACTCTACACTAAAATCGAAGGGGAGGTTATCTGGAAGTTTTGGCAAACTGAAAGCACAGAAAGTCAAGGCCCTCATCCACAGAACTATTCAGAAGAAGCAGGAAAGAAGCATTAATGATGATAACCTAGTTGCAGAACATCCAGAATTAGGAATAGAAGACAATTGTGAACAATCTAAGGGATCTAATTCTCACATAGGATATCAGAACACACCCAGTAAATCTCAAAACAATGACAACAGAATAGAGAGTTCAGATATGTTAGTTGAAAGGCATTCCACCCCTCGTTCAAAAGGATGGGGTGGTGGAGAATCTTCACGTACTTTGATGATTGAATCACAAAAACTGTCAAGGGAACAGAGAAAACCATTGTCTAACAGTGACTTTTTCAGTCGCAAGTCCTTCAAAGATCTTGGGTATAGTGAATATATGATTGAATCTCTGGCAAAGCAATTTTATCGGCGGCCTTCACATATACAGGCCATGGCATTTGAATCAGTATATACTGGAAAGAGTTGTATAATAGCTGATCAAAGTGGTTCTGGAAAGACTCTAGCATATCTTGCTCCAATTATTCAGAAGCTTAGACAAGAAGAATTGGAAGGAATTGCCAATTCCTCATCACAAGCTCCTCGAGTGGTTATATTGGCACCAACAGCTGAGTTAGCTTCTCAGGTGTTAGCTAATTGTCGATTAATGTCAAAATCTGGGGTTCCATTCAAATCTATGGTAGTAACAGGTGGCTTTCGACAGAGAACTCAACTGGAGAATTTAGAGCAGGGTGTTGATGTTTTAATAGCAACACCTGGCCGTTTTATGTTCCTCATCAAGGAAGGCTTCTTGCAGTTAACAAATTTAAGATGCGCGGTGTTGGATGAGGTAGATATACTTTTTGGTGATGAGGATTTTGAAGTGTCGCTTCAGTGCTTGATTAATTCTTCACTCGTTGCCACACAATATTTATTTGTGACTGCAACTTTACCGAAAGATATTTACAACAAACTAGTTGAAGTTTTTCCTGATTGTGAAGTGATCATGGGACCTGGTATGCACCGGATAAGCTCTCGACTTGAGGAGGTCCTCGTTGATTGCAGTGGAGCTGATGGGGAAGAAAAATCCCCGGATACAGCATTTCTTAATAAGAAGACAGCTCTTCTACAAATTGCAGAAGGAAGTCCTATCCCAAAAACCATTGTCTTCTGCAACAAAATTGAAACCTGCAGAAAAGTTGAGAATGCATTGAAGCGTTTTGATAGGAAAGAGACTCGTGTACAAGTTCTACCTTTCCATGCCGCCATGACACAGGAATTACGGCTTGCTAATATGGAAAAGTTTACACGTTCTCAATCAAAAGAAGTCTCCCAGTTTCTGGTTTGCACAGACAGAGCATCACGGGGGATTGACTTTACTGGAGTGGATCATGTTATACTTTTTGACTTCCCACGTGATCCAAGTGAATATGTGCGCCGTGTCGGAAGAACAGCAAGAGGCGCTGCTGGAAAAGGCAAGGCATATATATTTGTGGTTGGCAAGCAAGTATCACTTGCACGTAAAATCATGGATAGAAATAGGAAGGGTCATCCTCTACATGATGTGCCTTCGGCCTATGAGTTCATGAAGTAG 2019 0.4151 MDGYKLFICITGNISLAILSHFTAGTNAMLLGQASPVSFRTKPSCFELQIQSHARLLSFAQICFCDTSCTKVLRTSVGNAFLVRAGHSSAPKDVVSWNPNTANDGSSSNVENLSDITIVTEGFESESVITNSDSTLKSKGRLSGSFGKLKAQKVKALIHRTIQKKQERSINDDNLVAEHPELGIEDNCEQSKGSNSHIGYQNTPSKSQNNDNRIESSDMLVERHSTPRSKGWGGGESSRTLMIESQKLSREQRKPLSNSDFFSRKSFKDLGYSEYMIESLAKQFYRRPSHIQAMAFESVYTGKSCIIADQSGSGKTLAYLAPIIQKLRQEELEGIANSSSQAPRVVILAPTAELASQVLANCRLMSKSGVPFKSMVVTGGFRQRTQLENLEQGVDVLIATPGRFMFLIKEGFLQLTNLRCAVLDEVDILFGDEDFEVSLQCLINSSLVATQYLFVTATLPKDIYNKLVEVFPDCEVIMGPGMHRISSRLEEVLVDCSGADGEEKSPDTAFLNKKTALLQIAEGSPIPKTIVFCNKIETCRKVENALKRFDRKETRVQVLPFHAAMTQELRLANMEKFTRSQSKEVSQFLVCTDRASRGIDFTGVDHVILFDFPRDPSEYVRRVGRTARGAAGKGKAYIFVVGKQVSLARKIMDRNRKGHPLHDVPSAYEFMK 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0732 672 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 153 668 - -
Acco09g0732 672 SMART ultradead3 284 492 IPR014001 -
Acco09g0732 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 641 IPR027417 -
Acco09g0732 672 MobiDBLite consensus disorder prediction 186 239 - -
Acco09g0732 672 CDD SF2_C_DEAD 513 640 - -
Acco09g0732 672 Gene3D - 235 477 IPR027417 -
Acco09g0732 672 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 265 293 IPR014014 GO:0003724
Acco09g0732 672 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 512 672 IPR001650 -
Acco09g0732 672 SMART helicmild6 540 630 IPR001650 -
Acco09g0732 672 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 296 477 IPR014001 -
Acco09g0732 672 CDD DEADc 276 465 - -
Acco09g0732 672 Pfam Helicase conserved C-terminal domain 516 629 IPR001650 -
Acco09g0732 672 Gene3D - 504 669 IPR027417 -
Acco09g0732 672 MobiDBLite consensus disorder prediction 188 215 - -
Acco09g0732 672 Pfam DEAD/DEAH box helicase 290 463 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0732 Acco-ChrAcco09 12586787 12595577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0732 266 651 Eukaryotic Initiation Factors Gene Family AT3G19760 27.436 8.22e-27 111