Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0678 ATGTCTTCCTTCTTCAGAGTCCTCGTTGGGGAATACACTACTAAACTGCGAATCCCTCCCCTGTTTGTCTCCAGATTTTCTAGTCTTACACCAAAAACAGTAATGCTTTTTCTTTCTTCAGAAAAATCATGGATGGTTGATATTGAGGAAGAAGATAACAAACTAGTCTATTTCAAAAGAGGTTGGAACATATTTTTAGAAGATAATGCTTTAGAATTTGGGGATTTTATAGTTTTCAAATTCGATGGGAATTCAACATTCAAAGCTAAAATCTATGGAAAATCTTGCCTCAGAAGAAAAACCTCAATGTCAATGTCAGTATCTTCTTTCTTCAAGATCATCATCAATGAAGAATATACTACTAAACTGCGAATCCCTTTGTTGTTCGTCTCCAGATATTCTAGTCTAGTCCCAAAAACAGTAAAATTTATCAGGTCTTATTCTTCAGACAGATCATGGATGGTTGATATTGCGGAAGAAGACGACAAAAGGTCATATTATAAAAATGGCTGGAGTACATTTGTAAAAGATAATGCTGTGGAGATTGCATATTTTCTCGTTTTCAAATTTGTTGGGGATTCAACTTTTAAAGTTAAGATCTATGGAAAGTCTGCCTGTGAGAAGGAGCTTGAAAATGAGCTATGTGTCAACCAGTATTACTGCATACAGCATCATAATAAACAAATAACAACTCTAGAACGTCAAGTAACTAAGAGAGAATTAGATCCGATTGATGTAAAATACGTAACGATGGAGATGGTAGATCATGGAGATTCTAACCAAGAAATTGAGGCTCCCCAGAAAGAAGTTGAATCTCATGTCCCTATCAAGAAAACTGTAGACAACAGGCATGAGCCGATTGAAGGCCCCAATTTGGACTCTAAGAAGAATCCTTCATTCAAAATTCTTCTGCAACAAGCCTATGCGGAGAAGGGTGTCATGTGCTTTCCAACAGAGTTTTTCCATAAGCATATGAAGAATAAGAGACAAGAGGCTTAA 999 0.3624 MSSFFRVLVGEYTTKLRIPPLFVSRFSSLTPKTVMLFLSSEKSWMVDIEEEDNKLVYFKRGWNIFLEDNALEFGDFIVFKFDGNSTFKAKIYGKSCLRRKTSMSMSVSSFFKIIINEEYTTKLRIPLLFVSRYSSLVPKTVKFIRSYSSDRSWMVDIAEEDDKRSYYKNGWSTFVKDNAVEIAYFLVFKFVGDSTFKVKIYGKSACEKELENELCVNQYYCIQHHNKQITTLERQVTKRELDPIDVKYVTMEMVDHGDSNQEIEAPQKEVESHVPIKKTVDNRHEPIEGPNLDSKKNPSFKILLQQAYAEKGVMCFPTEFFHKHMKNKRQEA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0678 332 SUPERFAMILY DNA-binding pseudobarrel domain 103 206 IPR015300 -
Acco09g0678 332 SMART B3_2 4 95 IPR003340 GO:0003677
Acco09g0678 332 SMART B3_2 110 204 IPR003340 GO:0003677
Acco09g0678 332 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Acco09g0678 332 ProSiteProfiles B3 DNA-binding domain profile. 108 204 IPR003340 GO:0003677
Acco09g0678 332 CDD B3_DNA 3 92 IPR003340 GO:0003677
Acco09g0678 332 ProSiteProfiles B3 DNA-binding domain profile. 1 95 IPR003340 GO:0003677
Acco09g0678 332 PANTHER B3 DOMAIN-CONTAINING 107 270 - -
Acco09g0678 332 CDD B3_DNA 122 201 IPR003340 GO:0003677
Acco09g0678 332 Gene3D - 1 96 IPR015300 -
Acco09g0678 332 Gene3D - 102 206 IPR015300 -
Acco09g0678 332 Pfam B3 DNA binding domain 110 202 IPR003340 GO:0003677
Acco09g0678 332 Pfam B3 DNA binding domain 14 91 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0678 Acco-ChrAcco09 10850207 10853097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0678 110 210 B3 DNA Binding Superfamily AT5G66980 30.769 3.61e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco09g0678 B3 1.5e-11 CL0405