Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0614 ATGGCAAAATCTGGCGTGGCGGCGGTGGAATCTGATCCGGCGGCGGCGGCGGCGATGAAGGTGTTGGAGTTGAAGAAGGAGTTGAACAGATTGGTGAATTCCATCGTCGACGATGACGATTGCAGAATCCAAACCATTGATCAAGCTAGGGAAGTTCTTTCCTCTCTTAAGGACCTCAAGCTTCGAAAGAAATCATCATCATCGCCATCTTCACAATCTTCGGATTTAAAGCTAAACAGAAATTCCGGTTTTCCGGAAGAATTTAAGTGCCCTCTTTCTAAGGAGTTGATGAGAGATCCCGTCATTGTGGCTTCTGGAAAGACATATGATAGGCCCTTTATTCAAAAATGGCTTAAAGCTGGGAACAGAACTTGTCCTCAAACACAACAAGTCCTCTCACACACTGTCCTCACTCCAAATCACCTCATAAGGGAGATGATAGAACAATGGTGCAAGAACCATGGCGTGGAATTATCCTATCAACTTCACTCTATTTACAACGAGGAAGATGTAATAACAAACACAGATCGTGATCATTTTCATTCTCTGATTGAGAAACACTCATCAACATCACTTTCTGAGCAGAAAGCAGCCGCGAAGCAGCTCCGGTTATTGACAAAGAAGACGCCTTTGTACAGAACACTCTTTGGCGAGATTCCACAAGCCATTTCTGAGATTCTCAAACCGATCTCTGCAAGTGATTCCTTCAACCACATTCATTCTGATCTCCAAGAAGACGTGATCACAACACTTTTGAACATCTCAATCCACGACAGCAACAAGAAGCTTGTTGCTGAAACTCCCTCAGTGATTCCACTCCTTGTCAAAGCCTTAAAATCAGGAACCGTAGAAACCAGAAGCAATTCTGCAGCTACCCTTTTCACTTTATCTGCTCTAGACTCGAACAAGGAGCTCATAGGGAAATCTGGCGCCCTAAAGCCATTAATTGACCTCTTAGAAGAAGGCCACCCCTTAGCTATGAAAGATGTCACTTCAGCAATTTTCACCTTGTGTGTGGTTCATGAGAACAAGGCAAGAGCAGTGAGGGAAGGGGTGGTAAGCGTCATACTGAAGAAGATCTCAAGCCGGGTCTGCGTCGATGAATTGCTCACGATCCTTGCCCTGCTCTCAAGTCATCAAAAGGCTGTTCAGGACATGGTAGATCTTGGAGCTGTTCCCAACTTGCTGAGCATCATGAGGGAGAGCAATTGCGAACGAAACAAGGAGAACTGCATAGCAGTTCTTCAAACTATATGTCAGTATGACAGAGCAAAGCTGAAGGAAATAAAAGAAGAGGAGACTTCCTTCAGCACTATCACTGATCTTGCATTGAATGGAACTTCAAGGGCTAAGAGGAAGGCTAGTGGAATTCTTGAGAGACTGAATAGGGTTGTTAATATTACACACACTGCATAA 1416 0.4442 MAKSGVAAVESDPAAAAAMKVLELKKELNRLVNSIVDDDDCRIQTIDQAREVLSSLKDLKLRKKSSSSPSSQSSDLKLNRNSGFPEEFKCPLSKELMRDPVIVASGKTYDRPFIQKWLKAGNRTCPQTQQVLSHTVLTPNHLIREMIEQWCKNHGVELSYQLHSIYNEEDVITNTDRDHFHSLIEKHSSTSLSEQKAAAKQLRLLTKKTPLYRTLFGEIPQAISEILKPISASDSFNHIHSDLQEDVITTLLNISIHDSNKKLVAETPSVIPLLVKALKSGTVETRSNSAATLFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVTSAIFTLCVVHENKARAVREGVVSVILKKISSRVCVDELLTILALLSSHQKAVQDMVDLGAVPNLLSIMRESNCERNKENCIAVLQTICQYDRAKLKEIKEEETSFSTITDLALNGTSRAKRKASGILERLNRVVNITHTA 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0614 471 Pfam U-box domain 85 154 IPR003613 GO:0004842|GO:0016567
Acco09g0614 471 SMART Ubox_2 87 150 IPR003613 GO:0004842|GO:0016567
Acco09g0614 471 ProSiteProfiles U-box domain profile. 83 157 IPR003613 GO:0004842|GO:0016567
Acco09g0614 471 SUPERFAMILY ARM repeat 166 461 IPR016024 -
Acco09g0614 471 Gene3D - 219 365 IPR011989 -
Acco09g0614 471 CDD RING-Ubox_PUB 85 137 IPR045210 -
Acco09g0614 471 FunFam RING-type E3 ubiquitin transferase 170 467 - -
Acco09g0614 471 SUPERFAMILY RING/U-box 83 157 - -
Acco09g0614 471 PANTHER U BOX DOMAIN-CONTAINING 15 461 - -
Acco09g0614 471 FunFam RING-type E3 ubiquitin transferase 83 157 - -
Acco09g0614 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 157 IPR013083 -
Acco09g0614 471 SMART arm_5 379 420 IPR000225 GO:0005515
Acco09g0614 471 SMART arm_5 257 298 IPR000225 GO:0005515
Acco09g0614 471 SMART arm_5 299 339 IPR000225 GO:0005515
Acco09g0614 471 Gene3D - 366 466 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0614 Acco-ChrAcco09 9173327 9176092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0614 146 471 U-box Gene Family AT3G07360 60.061 6.05e-133 385