Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0458 ATGATTAGGGTTAGGGCAATCACGCGTATGGAAGCGTCCCCCGACCCCGTCACTCCTCCGGTGACTTACAGCTCGAATCGATACGGTATCCCATCTGCTTCTAATATTATTCAGGCACCCTTATCGTTGTTGTTGGAGCATTTAGGGGTTATTCGAAGCAGGTCTAATCAGCACGAGACTGAGCCATTAATTAACAACAATCGACTGCCTTCTGGATTCCGTGATGCTCTTCGGAATCGCCTTGACGAGTCATCGGTTGTTCCTAACGATGGGGAAGTGTCGATTAGTATTATTGGGGCTGGGGAACAACGACTTGACAGGGAAGGCGAAGTGAGGGAAGTTCTGTCCCAGAATGAAGTATCGATACCGGCGCAACCCTTGGCTGGGATACCGCCCTCTGCGACTATTCCTCCTGCCTCGGCCAATCAGGAACGTTCTAGGACTGATCATGCTGTAGAAGAGGGTGTTTCCCAATCTGTGAATGCAAATTCTGATGCTGAGACTGGTGATGGAGTTAGTGCTAACGCTAGGGATTCTTCATCCCAGAGGTATGATATTCAACAGGCTGCTCGGTGGATTGAGCAGGTCCTGCCTTTTTCCTTACTGTTGCTGGTCGTCTTCATTCGGCAGCATTTGCAAGGTTTTTTTGTTACAATTTGGGTCACGGCTGTCCTCTTCAAGTCAAATGACATATTGCGGAAGCAGACAGCTCTCAAGGGAGAGAGGAAAGTTCCTGTATTGATTGCCATTTCTGTTGCATTTACGTTGCACGTGGTTGGTGTATATTGGTGGTGTCAGAATAACGATATGCTATACCCATTGGCCATGCTTCCTCCCAAAGTCATACCTCCATTCTGGCATGTTATTTTCGTCATCACAGTGAATGATGCTTTGGTCCGCCAGGCAGGAATGGTGGTCAAGTGTATTTTGTTGATGTATTACAAGAATGGCCGAGGCCGAAATTATCGTAAGCAGGGCCAAATGCTGACTCTAGTTGAGTACCTACTCCTTCTTTACCGTGCCTTGTTGCCAACTCCAGTATGGTATCGGTTCTTCTTGAACAAAGAATACGGAAGTTTCTTTTCTTCATTGATGACAGGATTATATCTAACATTCAAGCTGACATCAGTCATCGAAAAGGTGCAATCCTTTTTTGCTTCTGTGAAGGCATTGTCACGTAAAGAAGTGCACTATGGGGCTTTTGCAACATCAGAACAGGTGAATGCCGTTGGTGATCTTTGTGCTATTTGCCAGGAAAAGATGCATACCCCCATCTTACTTTCTTGTAATCACATCTTCTGCGAAGAATGTGTATCAGAATGGTTTGAGAGGGAAAGGACCTGCCCCTTGTGTAGGGCTTTGGTGAAACCTGCAGATCTTAAATCATTTGGGGATGGCTCTACTAGTTTGTTTTTCCAGTTATTCTAA 1428 0.4594 MIRVRAITRMEASPDPVTPPVTYSSNRYGIPSASNIIQAPLSLLLEHLGVIRSRSNQHETEPLINNNRLPSGFRDALRNRLDESSVVPNDGEVSISIIGAGEQRLDREGEVREVLSQNEVSIPAQPLAGIPPSATIPPASANQERSRTDHAVEEGVSQSVNANSDAETGDGVSANARDSSSQRYDIQQAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWVTAVLFKSNDILRKQTALKGERKVPVLIAISVAFTLHVVGVYWWCQNNDMLYPLAMLPPKVIPPFWHVIFVITVNDALVRQAGMVVKCILLMYYKNGRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSFFSSLMTGLYLTFKLTSVIEKVQSFFASVKALSRKEVHYGAFATSEQVNAVGDLCAICQEKMHTPILLSCNHIFCEECVSEWFERERTCPLCRALVKPADLKSFGDGSTSLFFQLF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0458 475 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 24 475 IPR044235 GO:0061630|GO:1904294
Acco09g0458 475 Pfam Zinc finger, C3HC4 type (RING finger) 412 455 - -
Acco09g0458 475 MobiDBLite consensus disorder prediction 124 179 - -
Acco09g0458 475 MobiDBLite consensus disorder prediction 153 179 - -
Acco09g0458 475 CDD RING-HC_RNFT1-like 412 452 - -
Acco09g0458 475 ProSiteProfiles Zinc finger RING-type profile. 414 452 IPR001841 -
Acco09g0458 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 462 IPR013083 -
Acco09g0458 475 SMART ring_2 414 451 IPR001841 -
Acco09g0458 475 SUPERFAMILY RING/U-box 406 457 - -
Acco09g0458 475 ProSitePatterns Zinc finger RING-type signature. 429 438 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0458 Acco-ChrAcco09 6179853 6184099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0458 24 475 C3H Transcription Factor Family AT5G01960 66.960 0.0 596