LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco09g0422	ATGGAGAATCTGATGGCTGTGAAGGAGCTAGAGAAAGGGAGAGAGTTTGCGAATCTGCTTCGGAGATTGATGTTTAGGGGTGTGGATCAGGAAGATGAAGATAAGGTTAAGGGCTTAACGACGCCGTCTGCTGAAGATCTGGTGGCTAAAGTGTTGGATTCTTTCACCAACACACTCTCTCTCTTCAATCACCATTCAGCAGATTCCTCCATTACTACTACTTCTTCCTTCTCTCAGTTGCCAGCTCATTCTGATGAATCTCATGGGAACCCTAAGACCAAAAGCCCCACCACCATTAAAGATCGAACAAGATCCTCTCCCAAGAAAAGGCATATACAAACATGGCTGGAGGAATCCAGGATGACTCCAAAGGAAGATGGGCATGCATGGAGAAAATATGGCCAAAAAATCATCCTCAATACTAAATATCCCAGGAACTATTACAGATGCACTCACAAGCATGACCAAGGATGTAAAGCAATAAAACATGTTGAGAAAATCCAAGACGATCCTCCTCTTTTCAGAACCACTTATTTTGGTCACCACACTTGCACCGATCCTCTCAATCCTCATATCTTTCTTGATTCTGATGACGTCGTTAATTCAACTTCAGCTTTTATTCTCAGCTTTGAAAACAATAATAACAAAAACAACAAGAATAATCTTATTACCACCTTTGACCCAGAAAACAACAACAACAACACTGGCTCCTTCTTTGTCTCGTCTGGCTCTTTATTTCCGTCTTATAGTTCTGTGAAAAAAGAGGAGCACTGTGACAACAACATCAAGCAAGAGAAGAACAATAATAACAATAATGATGAGATTATTAATGTTGTTGCTTCATGTTCATCCAATAATGATTGCTTTGTGTCTCATCCTCACGAAGAAGAAACTGCTCTTCCTGATTTTGGATATGCAGATTATGACCAAGTGGATGTGTTTAATTCTGCTGCATTTTATGATCCTCTTGGCGGGTTTGAAGATATCTTATTGGAGATTATTTGA	1005	0.4	MENLMAVKELEKGREFANLLRRLMFRGVDQEDEDKVKGLTTPSAEDLVAKVLDSFTNTLSLFNHHSADSSITTTSSFSQLPAHSDESHGNPKTKSPTTIKDRTRSSPKKRHIQTWLEESRMTPKEDGHAWRKYGQKIILNTKYPRNYYRCTHKHDQGCKAIKHVEKIQDDPPLFRTTYFGHHTCTDPLNPHIFLDSDDVVNSTSAFILSFENNNNKNNKNNLITTFDPENNNNNTGSFFVSSGSLFPSYSSVKKEEHCDNNIKQEKNNNNNNDEIINVVASCSSNNDCFVSHPHEEETALPDFGYADYDQVDVFNSAAFYDPLGGFEDILLEII	334

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco09g0422	334	Pfam	WRKY DNA -binding domain	125	184	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco09g0422	334	MobiDBLite	consensus disorder prediction	72	111	-	-
	Acco09g0422	334	Gene3D	WRKY domain	109	188	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco09g0422	334	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	18	217	IPR044810	GO:0003700
	Acco09g0422	334	MobiDBLite	consensus disorder prediction	87	111	-	-
	Acco09g0422	334	SUPERFAMILY	WRKY DNA-binding domain	120	186	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco09g0422	334	ProSiteProfiles	WRKY domain profile.	119	187	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco09g0422	334	SMART	WRKY_cls	124	186	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco09g0422	334	MobiDBLite	consensus disorder prediction	72	86	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco09g0422	Acco-ChrAcco09	5713042	5714673	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco09g0422	2	198	WRKY Transcription Factor Family	AT3G56400	35.349	7.35e-30	114

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Acco09g0422		WRKY	4.1e-24	CL0274