Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0406 ATGCAATTCAGCTGTTTCCTTTTTCTTCTTTTTGCTCCGATTCTGGTGATCTCTACCGACCCGGCGGCGTTCAACGACGATGTGTTGGGGTTGATTGTGTTCAAAGAGGGTTTAAAAGACCCGAAAACTATGCTCTCCAGTTGGAACGAAGACGATGAAACTCCCTGCAATTGGGTTGGAGTCAAATGCGACCCGACGACCCGTAGGGTCTCTGCTTTAGTCCTTGATGGGTTTTCTCTTTCAGGGCATATTGATCGAGGGTTATTGAGATTACAGTTCCTTCAAGTTCTATCACTTTCTAGAAACAACTTCACAGGGACCATAATCCCTGATCTTCCTCGCCTTTGGAGCTTGCAACTTGTTGATTTGAGCGAGAACAGTCTCTCTGGATCAATCCCACAAGATTTTTTCCAGCAATGTGGGTCTTTAAGATCTGTGTCATTTGCCAGAAACAATCTTTCAGGTAAAATTCCTGATTCCTTAAGCTCTTGCTCTATGTTAGCTACTGTTAACTTCTCCCATAATCAACTTTCTGGAGAATTACCCTCTGGGATATGGTATTTGAGGGGATTGCAAACACTTGATCTGTCTAATAACTTGCTAGAAGGAGAGATTCCTGAGGGAATTGAGAACCAGAATGATTTGAGAGAGTTAAGTCTACCGAAGAATCGTTTTATTGGTAGGATTCCTGAGGGTATTGGAGGTTGCTTGCTCTTGAAATCACTTGACTTCAGTGATAATTTTTTCTCTGGGAGACTTCCTGACTCAATGCAGAAACTTAGCTCATGCACATCTCTCAGTTTACAGGGAAATTCATTCTCAGGAGGCATTCCTGATTGGATTGGAGAGTTGAAAAATCTGGAGATAGTAGACCTTTCTGCAAATTCATTCTCAGATTGGATTCCTAAATCAATAGGAAATCTTGATTACCTGAATAAACTAAATCTCTCAAGGAATCAACTTACAGGAAACTTGCCTGAGTCAATGAGTAACTGCATTAAGCTCTTGGCTATTGACATGAGCCACAATAAGTTATCAGGCCACATTCCTTCATGGTTTTTTAAGATGGGTTTAAAAAGTATTTCTCTTTCATGGAACAACTTCACCAAGGGCAATATTCCTACGCTTTCCTCCACATCGACGTCTTATTTTGGCCTCCAGGTTTTGGATTTGTCATCCAATGCATTTTCTGGTGGTCTTCCATCTAGCATTGGGGGTCTTAGTAGCTTGCAAGTCTTAAATATGTCCACCAACAATATCTCTGGTGCTATTCCAGTGAGTATAGGAGAGCTTAAATCTTTGTTCATTCTTGACCTAAGTGACAACAAGATTAATGGAAGCATTCCTTCTGAGATAGAAGGGTTGATTTCACTGAGTGAACTGAGACTGCAGAGGAATTTCCTTACTGGGAGAATTCCGACCCAAATTGATAAGTGTTCGTCCCTGACATCTTTGAATCTATCTCACAACAAGCTTGCTGGTTCAATCCCTTCAGCCATTGCAAACTTACACAATCTTCAGCACATGGACTTGTCATGGAATGAACTCTCTGGAAGCTTACCAAAGGAGCTGACAAATCTTTCCCACCTTTTCTCCTTTAATGTTTCCTACAACCACCTTCACGGCGAGCTACCGGTGGGCGGCTTCTTCAATACTATTCCCCCCTCATCTGTCTCTGCTAATCCATTGTTATGTGGTTCCATTGTTAATCACTCCTGCCCATCCGTTCATCCCAAACCAATTGTCCTTAACCCGAACTCTTCTGGCTCGAATTCTGGTCCTTCCTCTCATAATCGTCGTCATAAGAAGGTCATTCTCAGTATCTCTGCCCTTATTGCTATTGGAGCTGCTGCTTTTATCACCATTGGCGTGGTGGCTATTACACTGCTAAATATACATGCACGCCACACAATGTCACGTTCTGCTGCGCCATTTGCGCTATCCGGTGGTGAAGACTATAGTTGTTCACCCCAAAATGATCCGAACTATGGCAAACTTGTAATGTTCACTGGAGATGCTGAATTTGCTGATGGGGCTCATAATCTTCTCAATAAAGACAATGAGATTGGTCGCGGCGGATTTGGAGTTGTTTATCACACTATTCTTCGAGACGGGCGTTCTGTAGCAATCAAGAAGCTTACAGTCTCTAGTCTGGTCAAGTCCCAAGAAGACTTTGAGAGGGAAGTGAAAACACTTGGGAAGATGAGGCACCAGAATCTTGTGGCACTTGAAGGTTACTATTGGACTTCATCCTTGCAGCTTCTGATCTATGAGTACCTATCCAGAGGAAGTCTACATAAGCTTTTACATGATGAGAATAAGAAAGACATCCTTTCGTGGCGACAAAGGTTCAAGATTATACTTGGCATGGCAAAAGGGTTAGCCCATTTGCACCAAATGAACATAATTCACTACAATCTGAAATCAACAAATGTTCTGATTGACTGCTCTGGTGAGCCAAAAATAGGAGATTTTGGTCTGGTGAGGCTATTGCCAATGCTAGACCATTGTGTCCTGAGCAGCAAAATTCAAAGCGCACTCGGATACATGGCACCCGAGTTTGCTTGCCGGACGGTGAAGATAACCGAGAAATGTGATATATACGGGTTTGGGATCCTAGTTCTTGAGCTAGTGACCGGGAAAAGACCCGTGGAATACATGGAGGATGATGTGGTTGTTCTGTGTGACATGGTAAGAGGAGCATTGGAGGAAGGAAAGGCAGATCAGTGCATCGATCCGAGGCTTCTGGGAAATTTTGCTTCAGAAGAAGCAATTCCTGTGATAAAATTAGGTTTAATCTGTGCATCACAAGTGCCTTCAAACCGTCCAGACATGGCTGAAATAGTCAACATATTAGAGTTGATACAGTGCCCTTCAGAAGGACAAGAAGAAATAGAATGA 2901 0.4278 MQFSCFLFLLFAPILVISTDPAAFNDDVLGLIVFKEGLKDPKTMLSSWNEDDETPCNWVGVKCDPTTRRVSALVLDGFSLSGHIDRGLLRLQFLQVLSLSRNNFTGTIIPDLPRLWSLQLVDLSENSLSGSIPQDFFQQCGSLRSVSFARNNLSGKIPDSLSSCSMLATVNFSHNQLSGELPSGIWYLRGLQTLDLSNNLLEGEIPEGIENQNDLRELSLPKNRFIGRIPEGIGGCLLLKSLDFSDNFFSGRLPDSMQKLSSCTSLSLQGNSFSGGIPDWIGELKNLEIVDLSANSFSDWIPKSIGNLDYLNKLNLSRNQLTGNLPESMSNCIKLLAIDMSHNKLSGHIPSWFFKMGLKSISLSWNNFTKGNIPTLSSTSTSYFGLQVLDLSSNAFSGGLPSSIGGLSSLQVLNMSTNNISGAIPVSIGELKSLFILDLSDNKINGSIPSEIEGLISLSELRLQRNFLTGRIPTQIDKCSSLTSLNLSHNKLAGSIPSAIANLHNLQHMDLSWNELSGSLPKELTNLSHLFSFNVSYNHLHGELPVGGFFNTIPPSSVSANPLLCGSIVNHSCPSVHPKPIVLNPNSSGSNSGPSSHNRRHKKVILSISALIAIGAAAFITIGVVAITLLNIHARHTMSRSAAPFALSGGEDYSCSPQNDPNYGKLVMFTGDAEFADGAHNLLNKDNEIGRGGFGVVYHTILRDGRSVAIKKLTVSSLVKSQEDFEREVKTLGKMRHQNLVALEGYYWTSSLQLLIYEYLSRGSLHKLLHDENKKDILSWRQRFKIILGMAKGLAHLHQMNIIHYNLKSTNVLIDCSGEPKIGDFGLVRLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDIYGFGILVLELVTGKRPVEYMEDDVVVLCDMVRGALEEGKADQCIDPRLLGNFASEEAIPVIKLGLICASQVPSNRPDMAEIVNILELIQCPSEGQEEIE 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0406 966 Pfam Leucine rich repeat 385 444 IPR001611 GO:0005515
Acco09g0406 966 Pfam Leucine rich repeat 481 540 IPR001611 GO:0005515
Acco09g0406 966 Gene3D Ribonuclease Inhibitor 290 576 IPR032675 -
Acco09g0406 966 SMART LRR_typ_2 308 332 IPR003591 -
Acco09g0406 966 SMART LRR_typ_2 284 307 IPR003591 -
Acco09g0406 966 SMART LRR_typ_2 503 526 IPR003591 -
Acco09g0406 966 SMART LRR_typ_2 455 479 IPR003591 -
Acco09g0406 966 SMART LRR_typ_2 407 431 IPR003591 -
Acco09g0406 966 SMART LRR_typ_2 188 212 IPR003591 -
Acco09g0406 966 SMART LRR_typ_2 115 139 IPR003591 -
Acco09g0406 966 SMART LRR_typ_2 527 551 IPR003591 -
Acco09g0406 966 Gene3D Phosphorylase Kinase; domain 1 665 759 - -
Acco09g0406 966 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 677 759 - -
Acco09g0406 966 Gene3D Transferase(Phosphotransferase) domain 1 760 964 - -
Acco09g0406 966 Pfam Protein kinase domain 684 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco09g0406 966 ProSitePatterns Protein kinases ATP-binding region signature. 689 712 IPR017441 GO:0005524
Acco09g0406 966 Gene3D Ribonuclease Inhibitor 183 280 IPR032675 -
Acco09g0406 966 Gene3D Ribonuclease Inhibitor 25 182 IPR032675 -
Acco09g0406 966 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 187 953 - -
Acco09g0406 966 SUPERFAMILY L domain-like 290 555 - -
Acco09g0406 966 CDD STKc_IRAK 689 955 - -
Acco09g0406 966 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 25 303 - -
Acco09g0406 966 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 304 577 - -
Acco09g0406 966 ProSiteProfiles Protein kinase domain profile. 683 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco09g0406 966 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 760 961 - -
Acco09g0406 966 SMART LRR_sd22_2 284 310 - -
Acco09g0406 966 SMART LRR_sd22_2 188 211 - -
Acco09g0406 966 SMART LRR_sd22_2 503 529 - -
Acco09g0406 966 SMART LRR_sd22_2 431 457 - -
Acco09g0406 966 SUPERFAMILY Protein kinase-like (PK-like) 683 956 IPR011009 -
Acco09g0406 966 SUPERFAMILY L domain-like 43 369 - -
Acco09g0406 966 Pfam Leucine Rich Repeat 239 260 IPR001611 GO:0005515
Acco09g0406 966 Pfam Leucine Rich Repeat 191 211 IPR001611 GO:0005515
Acco09g0406 966 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0406 Acco-ChrAcco09 5390659 5393664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0406 7 963 Receptor kinase-like Gene Family AT5G01890 61.515 0.0 1132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Acco09g0406 Pkinase 5.8e-44 CL0016