LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco09g0377	ATGGAAGCTGAAGAATTGAGTTTGAAAATGGTGTCACGAACCTGCATGAATGCGGCTTGTACCACCTCGACATCGGTTCAGTGGCGGAAAGGATGGGCCCTGAGATCCGGCGAATTCGCCGATCTCTGTGATAAGTGCGGCTCTGCCTATGAGCAATCAACGTTTTGCTATGTGTTCCACTCAAAAGATTCTGGTTGGAGGGAGTGTGTGTCATGTGGCAAGCGTCTTCATTGTGGATGCATTGCTTCTCGAAATTTGCTTGAGCTGCTGGATGCCGGTGGTGTAAGCTGCATAGATTGTGCAAGAGATATAGGACAACCTAGTGCAACTATGGAAAAGCCTGATGGATCCAGTACATCAAAACTTGAAATTGGAAGCGAACTACAATGCTCATTGATTTCTAACCATTTAGGAAGCAATTTTGAGAAAGTGAGAGGGGTGCGAGTTGGGGATTATGCGGAGAATGATGGCCTTAGGAGTTGGCTCCATCCTCATAACGGTACTACAAATGGGCCTCCTGTGCGATTAAAACAAGAAGTTATGCCTTTTATTGGGGAGCTTGGAAGCACTTCAATATCACAATTTCATCCGGAGTCCAATGGACAATCTAAGGCTGTCAAAGTTGACAGCTGCAAGACAGATGTGGAAATAAGAGATATGTATGAATCATTTGCTCAAACAAATTTGAGTATGACTCTTGGTGCTCCTTTAGGAAATTCAAACTCCTTTCATAATGATGTTTTTGATGAGAGGGAGCACAGTAAGACATCGTCTTCAACATTACCAGGTCCCAGATCTCGCCATCTCTTACCCAAGCCCCCTAGGTCAAGCCTGGAGGTAAATGCAGGGATGGTATCTCAAATTCGTGTTGCTAGGCCACCTGCTGAAGGACGGGGAAGGAATCAGTTACTTCCCCGTTATTGGCCTAGGATCACTGATCAAGAGTTGCAGCAAATCTCTGGAGATTCAAATTCAATCATTGTGCCATTGTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTCTTCCTAAGGCTTGTGCTGAAACTTATTTTCCTCCTATCTCTCAGCCAGAAGGCCTTCCCTTACGAATCCAAGATGTGAAAGGAAAAGAATGGGTATTCCAGTTTAGATTCTGGCCGAACAACAACAGCAGAATGTATGTTCTAGAAGGGGTAACTCCCTGCATACAGTCTATGCAGTTGCAAGCTGGGGACACTGTGACATTTAGTCGTATGGACCCTGAAGGAAAACTGATAATGGGGTTTCGGAAGGCTACAAATTCTTCTGCAGCACAGGAATCTCATCCACCTAATTTTCCCAATGGCAATCGTTCAAGTGAAACTTCCTATCCTGGCGTTTATGAGAATTTACCTGTTTTAAGTGGCTACTCTGGCCTTCTTCAGTCATTAAAAGGAAGTTCAGAAACCCACCTAAATGCACTGTCTAAAAAGTGGAATTCAGCTTGTGGGGACGTGAATTGGCACAATATTGAGATGCCTGAAGGCAGGAAAAGAGACGGATTGCTTCTACCACCAGCGCTGGTTCCAGAGAAGAAAAAGGCTCGTAATATTGGGCCAAAAAGTAAGAGATTGCTTATTGACAGCCAGGATGCACTGGAGCTGAAACTAACCTGGGAAGAGGCTCAGGATTTGCTCCGTCCACCGCCAGCAGTTAAGCCAAGCATTGTCATGATTGAAGATCATGTATTTGAAGAATATGAAGAACCTCCTATCTTTGGGAAGAGAAGTGTATTTGTAGCCCGGTCAACTGGGATGCATGAACAATGGACTCAATGCGATAATTGCTCAAAATGGCGAAAGTTGCCTGTGGATGTACTTGTTCCCCCTAAGTGGATATGTGGGGACAATTCATGGGATCAGAGCAGGAGTTCATGTTCTGCCCCCAGTGAGCTCAGCCCGAGGGAACTAGATAATCTTCTGAGATTAAATAAGGAATTCAAGAAACAAAGAATGGCAGCTAGCCACAGGCTGTCCCTGGAGCAGCATGAATCTTCTGGACTGGATGCTCTGGCTAATGCTGCAATACTCGGAGACGATGCAGGTGACTCTAGCAGGACACCAGTGGCTACCACCACAAAACACCCTCGGCATAGACCTGGTTGCTCCTGCATTGTCTGCATCCAGCCACCCAGTGGAAAGGGAAAACACAAACCAACATGCACTTGCAATGTATGTATGACGGTTAAACGTCGGTTTAAGACCCTGATGATGCGAAAGAAGAAACGTCAATCTGAACGCGAAGCAGAGATTGCTCAGAGAAATCAGCAATCATGTGGACCGAGGGATGAATCAGAAGTAGAAAGCACTTCTAGAAATTTAACTCCAGCTGATGGTTGTGAGACTGAAGCAAGGGCACCAAACGAGTTGGACTCAAGAAGTCAAACCGATGTGGCTGAAACTAGCAAGGGACAGTTAGACTTGAACTGCGATCCTGATCGAAACGACGTGCAAGCCGGCGGCTCAAACAGTGTCAGCATGATGAGTCTACTTCAAGAAGCAAGTCTCCCTTTGGAGGCATATCTGAAACAAAATGGTCTTACTAGCTTGGCATCAGAGCAACAAGCAACTTCAGCTTCCAATGTGCAGGCGCAGACCATTAATGAGAGCGAGGGAAGACACAACGAGGATTGCCGTGCTGCTTCTGTTGTTAAGGAGCAAGAAAGCAGTCATGAAGAGAACAGTGGTCAAGACCAAAGCGAAAACAATCCCCCTTCATGA	2757	0.4581	MEAEELSLKMVSRTCMNAACTTSTSVQWRKGWALRSGEFADLCDKCGSAYEQSTFCYVFHSKDSGWRECVSCGKRLHCGCIASRNLLELLDAGGVSCIDCARDIGQPSATMEKPDGSSTSKLEIGSELQCSLISNHLGSNFEKVRGVRVGDYAENDGLRSWLHPHNGTTNGPPVRLKQEVMPFIGELGSTSISQFHPESNGQSKAVKVDSCKTDVEIRDMYESFAQTNLSMTLGAPLGNSNSFHNDVFDEREHSKTSSSTLPGPRSRHLLPKPPRSSLEVNAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSIIVPLFEKMLSASDAGRIGRLVLPKACAETYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSSAAQESHPPNFPNGNRSSETSYPGVYENLPVLSGYSGLLQSLKGSSETHLNALSKKWNSACGDVNWHNIEMPEGRKRDGLLLPPALVPEKKKARNIGPKSKRLLIDSQDALELKLTWEEAQDLLRPPPAVKPSIVMIEDHVFEEYEEPPIFGKRSVFVARSTGMHEQWTQCDNCSKWRKLPVDVLVPPKWICGDNSWDQSRSSCSAPSELSPRELDNLLRLNKEFKKQRMAASHRLSLEQHESSGLDALANAAILGDDAGDSSRTPVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQQSCGPRDESEVESTSRNLTPADGCETEARAPNELDSRSQTDVAETSKGQLDLNCDPDRNDVQAGGSNSVSMMSLLQEASLPLEAYLKQNGLTSLASEQQATSASNVQAQTINESEGRHNEDCRAASVVKEQESSHEENSGQDQSENNPPS	918

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco09g0377	918	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS07G0563300	12	870	-	-
	Acco09g0377	918	ProSiteProfiles	B3 DNA-binding domain profile.	331	432	IPR003340	GO:0003677
	Acco09g0377	918	SUPERFAMILY	DNA-binding pseudobarrel domain	329	431	IPR015300	-
	Acco09g0377	918	MobiDBLite	consensus disorder prediction	749	834	-	-
	Acco09g0377	918	FunFam	B3 domain-containing transcription repressor VAL1	309	436	-	-
	Acco09g0377	918	ProSiteProfiles	Zinc finger CW-type profile.	596	646	IPR011124	GO:0008270
	Acco09g0377	918	Gene3D	-	309	436	IPR015300	-
	Acco09g0377	918	MobiDBLite	consensus disorder prediction	690	711	-	-
	Acco09g0377	918	MobiDBLite	consensus disorder prediction	763	789	-	-
	Acco09g0377	918	MobiDBLite	consensus disorder prediction	249	278	-	-
	Acco09g0377	918	MobiDBLite	consensus disorder prediction	882	907	-	-
	Acco09g0377	918	Gene3D	-	599	655	-	-
	Acco09g0377	918	Pfam	B3 DNA binding domain	331	430	IPR003340	GO:0003677
	Acco09g0377	918	MobiDBLite	consensus disorder prediction	864	918	-	-
	Acco09g0377	918	MobiDBLite	consensus disorder prediction	864	881	-	-
	Acco09g0377	918	MobiDBLite	consensus disorder prediction	431	453	-	-
	Acco09g0377	918	Pfam	CW-type Zinc Finger	601	643	IPR011124	GO:0008270
	Acco09g0377	918	CDD	B3_DNA	329	430	IPR003340	GO:0003677
	Acco09g0377	918	SMART	B3_2	331	431	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco09g0377	Acco-ChrAcco09	4799013	4804999	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco09g0377	13	887	B3 DNA Binding Superfamily	AT4G32010	50.899	0.0	831

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Acco09g0377		B3	3e-15	CL0405