Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0375 ATGCATCGCCGTCTTCTCGACTACGGGCCCACAGTGTCGCCGGCAGATAGAAACAAGACTCACGAATCGTTCGTTGGCGATGTGAACTTCGACGCGAACATGGTGATCATATTGGCGGCTTTATTGTCAGCATTAATATGCGCGCTTGGATTGAACTCGATAGTGCGATGTGTGTTGCGATGTAGCCGAAGATTTTCCACAGAGACCACAGAACAAACAGCTACAAGGCTTGCCTCAACGGGCCTGAAGAAACGTCACCTTAGCAAGATTCCGGTGAAGGAGTACGGGCCCGGGGTAAATATTCCGTCGACGGAATGTCCGATCTGCCTCGGGGAATTCGAGAAAGGAGATAAGGTGCGAATGCTGCCAAAATGTAATCACGGGTTCCATGTGAGTTGCATAGACACGTGGCTTTTGTCAAATTCTTCTTGCCCCAACTGTCGCCATTCACTGCTCGAGAAATCCACAAATCTGATTCCGATTTCGAATCGGAGACGTGACGGAGGACGAGATGTCGCCGGCGCTCAGGCGCCGACAAATGGGTCCAGCGGCAACGGGCAAGTCCACGCTGCGGTGGTCGTCGATGAGCAGGCAAGCTGA 600 0.5267 MHRRLLDYGPTVSPADRNKTHESFVGDVNFDANMVIILAALLSALICALGLNSIVRCVLRCSRRFSTETTEQTATRLASTGLKKRHLSKIPVKEYGPGVNIPSTECPICLGEFEKGDKVRMLPKCNHGFHVSCIDTWLLSNSSCPNCRHSLLEKSTNLIPISNRRRDGGRDVAGAQAPTNGSSGNGQVHAAVVVDEQAS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0375 199 PANTHER RING-H2 FINGER PROTEIN ATL78 21 162 IPR044602 GO:0016567|GO:0016740
Acco09g0375 199 MobiDBLite consensus disorder prediction 161 188 - -
Acco09g0375 199 SMART FANCL_C_2 102 155 - -
Acco09g0375 199 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Acco09g0375 199 SUPERFAMILY RING/U-box 87 154 - -
Acco09g0375 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 153 IPR013083 -
Acco09g0375 199 SMART ring_2 106 147 IPR001841 -
Acco09g0375 199 CDD RING-H2_EL5-like 105 148 - -
Acco09g0375 199 Pfam Ring finger domain 105 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0375 Acco-ChrAcco09 4784258 4784857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0375 4 167 C3H Transcription Factor Family AT3G10910 54.913 8.05e-58 178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco09g0375 09 4784258 4784857 Acco09g0375 09 4784258 4784857 ECH