Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0362 ATGGCGATTCCTCCTCAAATCTTCCCTCCTCGTAAACGACGGCCGTCGGTGGCGTCGTTTATCTCCCCCAAACTCACAGAACTTGACCTTCTTCACTCTCTGCTTCACCTCACCCGTGAGATTTCCTCTCTCAAACCCATCCATTTCCTTCTCAAACGCAATTCCTGTTCCATAATTCGCAAGACCAATCTTCTCTCTGTTCTCTTCGAAGAGTTTATTAGAAGTCCCATTTCTCTTTCCTTCCAATCTGTCATTCTTTGTTTCGAAGAAATGTACATAGTTCTTCAGAGGATCAAGACCTTGATCGAAGATTGCTCCAACGGAAGCAAGATGGCGATGTTGCTGCAGAACGAATTAATTGCTGATAATTTTCACAAACTCACGGCGGATTTATCGACGCTTCTGGATATATTCCCGGTGATGGAGCTTGAATTAAGCGATGATGTGCGGGAGCTTGTGATCCTGATCAGAAAACAATGCATTGAATCCAAGGCTTTTGTGGATCTCAAGGACAACGAGCTCAGGCATGCGGTTGTCACGATACTTGATCGTATTAAGCGCGAGATCGTCCCCGATCATTCAAAGCTTGCCGATATCTTCGAGAGGTTGGAAATTCGAGATTCTTCGAGTTGCAGAGCGGAGATTGAGAGTTTAGAGGAGGAAATTCAGAATCGAAACGATGAGCAATCCAAATCTGAGCTCGTCGCTTTGATCGGACTCGTCCGATACGCGAAATGCGTTCTATTCGGAGCTTCCACGGCGTCTTCTTCTTCTTCCTCCTCCTCTGATGATGCAAAGCGGCGGAAACAGCCGTCGGAGATCGCTGTCCCGGCGGATTTCAGGTGCCCGATCACTCTCGACCTAATGCGCGACCCTGTTGTCGTGGCAACAGGACAGACGTACGATCGTGAGTCCATCCAACTGTGGTTCGAATCGGGGCATAACACGTGTCCCAAGACTGGTCAAACTCTGGCCCACACGGACCTCATCCCAAACCGTGCATTGCAGAATCTTGTAACGATGTGGTGCCGCGAGCAAAAGATACTGTTTGAAACCGCGGGCAGTAACGACAAACCTCACGGCGTTATCATCAACAAAGCCGCCTTAGAAGCTACTAGAATGACGGCGTCATTCTTAATCAACAAGTTGTCTCTTTCTCCGTCCATGGAAGCCGCAAATGCCGTTGTTTATGAGCTTCGCGTTCTCGCTAAGACAGACTCTGATAGCCGAGCCTGCATAGCCGAAGCCGGAGCCATCCCTCTCTTAGTTAGCTACTTGAGCTTCAATGTCGGCTCACAGAATCAAGACCTCCAAGTTAACGCCGTGACGACCATCCTCAACCTTTCCATCCTCGAGGCGAACAAAGCGATGATAATGGAGACTGACGGAGCAATAAACGGCGTCATCGAGGTCCTTCGCTCAGGAGCCACGTGGGAGGCGAAAGCCAACGCAGCCGCCACAATATTCAGCTTATCTGGCGTCCACTCTTATAGAAGAAGACTGGGGAGGAAGACACGTGTCACTCGTGGGTTGATTGACTTGGCAAAGTGTGGGCCCACCGCTGCCAGGAGGGATGCTCTGGTGGCAATTTTGACCCTGGCGGCGGACAGAGAGACGGTGGCGAGGTTGGTGGAAGCTGGGGTCGTGGAGATGACGGCGGAAGTTATGGACGGGTTACCGGAAGAGGCGGTGACGATTCTTGAGGTGGTTGTGAAGCGGGGAGGATTGATGGCTGTCGCCGCCGCGTTCGGCAGCATTAAGAAATTGGGAGTTATATTGAGGGAAGGTACTCATAGGGCCAGAGAGAGTGCGGCGGCGACGCTTGCCACGATGTGTCGTAAAGGGGGGTCGGATATAGTGGCGGACTTGGCCTCCTTGCCGGGAATTGAAAGAGTGATATGGGAATTGATGGCCATTGGGACTGTAAGAGGGAAAAGAAAAGCCGCCACGTTGTTGAGGATTCTCCGGCGATGGGCTGCCGGTTTGGACGGTGCAGGGTTAACGGAAGGATTTTCAACGGCCATCACAGTGTCAACAACGATGGTTTCAACTCAATAG 2058 0.5112 MAIPPQIFPPRKRRPSVASFISPKLTELDLLHSLLHLTREISSLKPIHFLLKRNSCSIIRKTNLLSVLFEEFIRSPISLSFQSVILCFEEMYIVLQRIKTLIEDCSNGSKMAMLLQNELIADNFHKLTADLSTLLDIFPVMELELSDDVRELVILIRKQCIESKAFVDLKDNELRHAVVTILDRIKREIVPDHSKLADIFERLEIRDSSSCRAEIESLEEEIQNRNDEQSKSELVALIGLVRYAKCVLFGASTASSSSSSSSDDAKRRKQPSEIAVPADFRCPITLDLMRDPVVVATGQTYDRESIQLWFESGHNTCPKTGQTLAHTDLIPNRALQNLVTMWCREQKILFETAGSNDKPHGVIINKAALEATRMTASFLINKLSLSPSMEAANAVVYELRVLAKTDSDSRACIAEAGAIPLLVSYLSFNVGSQNQDLQVNAVTTILNLSILEANKAMIMETDGAINGVIEVLRSGATWEAKANAAATIFSLSGVHSYRRRLGRKTRVTRGLIDLAKCGPTAARRDALVAILTLAADRETVARLVEAGVVEMTAEVMDGLPEEAVTILEVVVKRGGLMAVAAAFGSIKKLGVILREGTHRARESAAATLATMCRKGGSDIVADLASLPGIERVIWELMAIGTVRGKRKAATLLRILRRWAAGLDGAGLTEGFSTAITVSTTMVSTQ 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0362 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 463 IPR000225 GO:0005515
Acco09g0362 685 Pfam Armadillo/beta-catenin-like repeat 407 449 IPR000225 GO:0005515
Acco09g0362 685 SUPERFAMILY RING/U-box 274 348 - -
Acco09g0362 685 PANTHER U BOX DOMAIN-CONTAINING 37 656 - -
Acco09g0362 685 FunFam RING-type E3 ubiquitin transferase 362 550 - -
Acco09g0362 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 352 IPR013083 -
Acco09g0362 685 FunFam RING-type E3 ubiquitin transferase 272 349 - -
Acco09g0362 685 MobiDBLite consensus disorder prediction 253 272 - -
Acco09g0362 685 SMART arm_5 406 450 IPR000225 GO:0005515
Acco09g0362 685 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Acco09g0362 685 Gene3D - 28 141 IPR036537 GO:0007166
Acco09g0362 685 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Acco09g0362 685 SUPERFAMILY ARM repeat 379 655 IPR016024 -
Acco09g0362 685 Coils Coil 208 235 - -
Acco09g0362 685 Gene3D - 521 659 IPR011989 -
Acco09g0362 685 Gene3D - 364 520 IPR011989 -
Acco09g0362 685 Pfam U-box domain 276 347 IPR003613 GO:0004842|GO:0016567
Acco09g0362 685 CDD RING-Ubox_PUB 277 329 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0362 Acco-ChrAcco09 4601610 4603667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0362 9 661 U-box Gene Family AT5G01830 59.513 0.0 746