Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0299 ATGAGTCCTGTCCCCTTCATTCTACCTCCTACTCTGGGAACTGCTGCTGTGTATTTTGTAGATTACAAGGTGGTCCTTGGCAATGCTTGCTTCATGGAATGCTTCCATATCAAGAAGAGACACTTTATGTGCCATGAATGTGGATTTAGATGGTGCGACAGGCAGATATCTGGTCATCGAGGAATAGGTTGGGGAGAGACAATGAAGCAGGTGGTAGGAACGGTGGTGTCAAACAAGATGCAGAAATCAGTGGTGGTGGCAGTGGATAGGCTATTCCACCACAAAATATACAACCCTTATATCAAACGCACCTCTAAATTTATGGCACATGATGAGAACGATGTTTGTAAGATTGGTGATCGAGTTCGACTTGATCCTTCCAGGCCTTTGAGCAAGCGTAAGCATTGGATTGTCTCTGAAATCATTAAGAAAGCAAGAATTTACGTTCCACCTTCTGCACCTGTGACTAAAGAGCCAGGCTCCAGCTCTGAAGCGCCTGCTTCCTAGTTTAGTGCAGCACATACAATTTTATTTGGTGGGATAAAATTTGTTGATGCTGTTGTTGTGCTGTGGTCTGTACATGAACAAAAGAGGAAGAAAAACATGTCTGAGAAATGGAAGAAAGGTTGTATTAAGACCACTAAAGGACCTTGGATGGTTAAGAAAGTCAGTAAAGATGGTTCTGTTAAACAAACACAGAGATTTCCAAGTGAGCGAGAGAGACAAAACAATAAGCTGAGAGAGAGGAATCGAAGAGCGATGACCCGGAAAATATTTGCTGGTTTGAGAGTTCATGGAAACTATGATCTTCCCAAACATTCAGACACTAATGACTTGCTTATGGCATTGTGTGAAGAAGCTGGCTGGGATGTTGAAAAAGATGGAACCATTTATAGAAAGAAAAGGGATTTAAGTTCAGCTCAAAAGGTGTGTCAACCATATCTTACAAATGGTGATATTAAAAATGAAAACATTCAAAACAGGAAAGGAGGGCCAAGGTTGACTGGAGGATCAGCAGGCAATGTTAACCTTGAACTTTCACTCTAG 1047 0.4174 MSPVPFILPPTLGTAAVYFVDYKVVLGNACFMECFHIKKRHFMCHECGFRWCDRQISGHRGIGWGETMKQVVGTVVSNKMQKSVVVAVDRLFHHKIYNPYIKRTSKFMAHDENDVCKIGDRVRLDPSRPLSKRKHWIVSEIIKKARIYVPPSAPVTKEPGSSSEAPASXFSAAHTILFGGIKFVDAVVVLWSVHEQKRKKNMSEKWKKGCIKTTKGPWMVKKVSKDGSVKQTQRFPSERERQNNKLRERNRRAMTRKIFAGLRVHGNYDLPKHSDTNDLLMALCEEAGWDVEKDGTIYRKKRDLSSAQKVCQPYLTNGDIKNENIQNRKGGPRLTGGSAGNVNLELSL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0299 348 Hamap 30S ribosomal protein S17 [rpsQ]. 68 143 IPR019984 GO:0003735|GO:0005840|GO:0006412
Acco09g0299 348 FunFam 30S ribosomal protein S17 68 168 - -
Acco09g0299 348 Pfam BES1/BZR1 plant transcription factor, N-terminal 233 313 IPR008540 -
Acco09g0299 348 Gene3D - 67 159 IPR012340 -
Acco09g0299 348 PRINTS Ribosomal protein S17 family signature 87 110 IPR000266 GO:0003735|GO:0005840|GO:0006412
Acco09g0299 348 PRINTS Ribosomal protein S17 family signature 119 129 IPR000266 GO:0003735|GO:0005840|GO:0006412
Acco09g0299 348 PRINTS Ribosomal protein S17 family signature 129 136 IPR000266 GO:0003735|GO:0005840|GO:0006412
Acco09g0299 348 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 231 301 IPR033264 GO:0003700|GO:0006351|GO:0009742
Acco09g0299 348 MobiDBLite consensus disorder prediction 320 340 - -
Acco09g0299 348 NCBIfam 30S ribosomal protein S17 69 138 IPR019984 GO:0003735|GO:0005840|GO:0006412
Acco09g0299 348 Pfam Ribosomal protein S17 73 140 IPR000266 GO:0003735|GO:0005840|GO:0006412
Acco09g0299 348 SUPERFAMILY Nucleic acid-binding proteins 68 157 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0299 Acco-ChrAcco09 3648460 3653202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0299 245 302 Glycoside Hydrolase AT5G45300 56.897 7.58e-16 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Acco09g0299 BES1_N 1.4e-33 No_clan