LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco09g0297	ATGGTATCTCTGTTTTCTTCTTTTCCAAGTATGAATATCAATTTTGAGAATTCTAAACAGACTTCTTTTATGGATGGTAATTGTAGGAACAAGACATCGCGTAAGGGACGAAGAAGTGGGAGTGGCTCTGTAACAGACACTCTTGAGAAGTGGAAGAAGTATAACAGTGAGCTTGAGTTTGTCAAAAATGGAGCAAAGAAAGCGAGTCACAGAGTGCCAGCGAAAGGTTCAAGAAAGGGATGCATGAGAGGCAAAGGAGGGCCTCAAAACTCAGATTGCAACTACAGAGGAGTGAGACAGAGGATTTGGGGCAAATGGGTGGCAGAAATTCGCGAACCCATTACTGGAAATCACAGTATCCTGGGAAACAAGAAACCAAATCGCTTATGGCTCGGCACTTTCTCTACTGCACTTGAAGCTGCTCTTGCTTATGATCAAGCAGCCAAAGCCATGTACGGTCCTTGCGCTCGCCTGAACTTTCCTGAGTATAATATGGAAGGAGAAGTAGTAGGAGTAGAAGAAGAAGAAGAAGAACCCACATGCTCTAATGAGGAAACAGAGAAGAAACATGAGGTTGTTCTGGTGAAGACTGAAGAAGAAACAGAGGATTGTGGTGTCAATGAAAGTGAAGCTGCCTTTGGGAGGAAGCAGATGGAGGAAATGACGTGTGGGATTCTGGGATTTTGTACATCTGATGAGGAATATAAAGCTTCTGCAGAGAGAAAATTTGAAGATGAGGAGCGTTTGAACAATTTTGGTGATGGAAACTTCATGTTTGAAGAAAAAGAAACTGATGAGTGGCAGATTGGTCATTTGCCTCTGTATCTGAATAACATGAAGGAGGCAGACCGGGAAGTTGGTTATTATGACTACAGTTTCTTGAGACCTGATTATGACTTTGGCTTATTGGAAGAGAAAAACTTACTTGGTATATGGTTTCCACATAAAGGTTCTTAA	957	0.4201	MVSLFSSFPSMNINFENSKQTSFMDGNCRNKTSRKGRRSGSGSVTDTLEKWKKYNSELEFVKNGAKKASHRVPAKGSRKGCMRGKGGPQNSDCNYRGVRQRIWGKWVAEIREPITGNHSILGNKKPNRLWLGTFSTALEAALAYDQAAKAMYGPCARLNFPEYNMEGEVVGVEEEEEEPTCSNEETEKKHEVVLVKTEEETEDCGVNESEAAFGRKQMEEMTCGILGFCTSDEEYKASAERKFEDEERLNNFGDGNFMFEEKETDEWQIGHLPLYLNNMKEADREVGYYDYSFLRPDYDFGLLEEKNLLGIWFPHKGS	318

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco09g0297	318	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	30	223	-	-
	Acco09g0297	318	Gene3D	AP2/ERF domain	94	162	IPR036955	GO:0003700\|GO:0006355
	Acco09g0297	318	PRINTS	Ethylene responsive element binding protein signature	127	143	IPR001471	GO:0003700\|GO:0006355
	Acco09g0297	318	PRINTS	Ethylene responsive element binding protein signature	95	106	IPR001471	GO:0003700\|GO:0006355
	Acco09g0297	318	MobiDBLite	consensus disorder prediction	68	89	-	-
	Acco09g0297	318	MobiDBLite	consensus disorder prediction	20	45	-	-
	Acco09g0297	318	FunFam	Ethylene-responsive transcription factor 2	93	162	-	-
	Acco09g0297	318	SUPERFAMILY	DNA-binding domain	94	162	IPR016177	GO:0003677
	Acco09g0297	318	SMART	rav1_2	94	167	IPR001471	GO:0003700\|GO:0006355
	Acco09g0297	318	CDD	AP2	93	162	IPR001471	GO:0003700\|GO:0006355
	Acco09g0297	318	ProSiteProfiles	AP2/ERF domain profile.	94	161	IPR001471	GO:0003700\|GO:0006355
	Acco09g0297	318	Pfam	AP2 domain	93	153	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco09g0297	Acco-ChrAcco09	3631523	3632479	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco09g0297	32	199	AP2-EREBP Transcription Factor Family	AT2G40340	46.154	4.01e-44	152

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco09g0297		AP2	7e-14	CL0081