Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0229 ATGAAAGTGTTGGCCAGAATTGAATTCCTTTATATCTGCAATCACAAATTGTCTGCCACTCTGCCGTTCATTTGCACAATACAGCACATATCGCATGCATCTCTGTCACCTTCGATCTCGTCGATCCCTTCTTCTCAGGCCCTCTTCTTCTTTTCTCTTCACTTCATCTTCCTAGTGTTTCGAATTCGTACCCTTTCGCTCAGATCTCAGTTGTTTTTTATGGAAATGGCTTCTAGTCCGCGCACCGTGGAGGAGATCTTCAAGGATTATAGTGCTCGAAGAGTCGGTGTTGTTCGTGCTCTGACTCAAGATGTGGATGAATTTTATAGATTCTGTGATCCAGAAAAGGAGAATTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCCCCGGAGCTTCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGGGATGGCATGATGCGCAGGGACTGGCTTTCTCTTGTCGCTGTTCACAGTGATTCATGGCTGCTTTCTGTGGCATTTTATCTTGGGGCCCGTCTCAACCGTAATGAAAGGAAGCGTTTATTTAGCTTGATCAATGATCTTCCCACTGTCTTTGAAGTTGTGACTGAGAGAAAGGCTGTAAAGGACAAGCCAACTGTGGACAGTGGAAGCAAGTCCAGGGGAAGCTCCAAGAGATCAATTGATGGGCACGTTAAAGGCAATCCCAAGTTTGCAGATGAGGGTTATGAGGAGGATGAAGATGAGCATAGTGAAACCCTTTGTGGGAGCTGTGGTGGAAACTACAACGCTGATGAATTTTGGATTGGCTGTGATGTCTGCGAGAGGTGGTTTCATGGGAAATGTGTGAAGATCACCCCTGCCAAGGCTGAGAGCATAAAGCAATACAAATGTCCATCTTGCATGAAGCGGGGCAAGCCCTAG 936 0.4626 MKVLARIEFLYICNHKLSATLPFICTIQHISHASLSPSISSIPSSQALFFFSLHFIFLVFRIRTLSLRSQLFFMEMASSPRTVEEIFKDYSARRVGVVRALTQDVDEFYRFCDPEKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMMRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKAVKDKPTVDSGSKSRGSSKRSIDGHVKGNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCMKRGKP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0229 311 PANTHER CPG BINDING PROTEIN 79 308 IPR045104 GO:0006355|GO:0042393
Acco09g0229 311 SMART PHD_3 258 306 IPR001965 -
Acco09g0229 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 307 IPR013083 -
Acco09g0229 311 SUPERFAMILY FYVE/PHD zinc finger 247 309 IPR011011 -
Acco09g0229 311 Pfam Alfin 82 207 IPR021998 GO:0006355|GO:0042393
Acco09g0229 311 MobiDBLite consensus disorder prediction 214 244 - -
Acco09g0229 311 FunFam PHD finger alfin-like protein 251 307 - -
Acco09g0229 311 Pfam PHD-finger 259 307 IPR019787 -
Acco09g0229 311 ProSiteProfiles Zinc finger PHD-type profile. 256 308 IPR019787 -
Acco09g0229 311 CDD PHD_AL_plant 258 308 IPR044104 -
Acco09g0229 311 ProSitePatterns Zinc finger PHD-type signature. 259 305 IPR019786 -
Acco09g0229 311 MobiDBLite consensus disorder prediction 214 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0229 Acco-ChrAcco09 2643479 2647929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0229 77 310 Alfin-like Transcription Factor Family AT5G05610 77.119 4.76e-118 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Acco09g0229 Alfin 7.5e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco09g0229 09 2643479 2647929 Acco07g2039 07 38105795 38108592 CCT
Acco07g1979 07 37336312 37336689 Acco09g0229 09 2643479 2647929 CCT