Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0181 ATGAACAGGGGAATTGAAGTTTTCTCTCCAGCTTCTTACCTTGAAAACTCCAATTGGTTGTTCCAAGAAAGCAAAGGATCAAAATGGACCCCAGAAGAGAACAAGCGATTTGAAGATGCTTTGGCCTTGTACGACAAAGATGCTCCAGATCGTTGGTTGAAAGTTGCAGCTAAAGTTCCAGGGAAGACAGTGGGAGATGTGATTAGGCAGTACAAACAACTTGAAGAAGATGTTAGTGTCATTGAGGCAGGGTTGATTCCAGTGAGTGAGTACGATGACAACAACAGTTCTTTCACTTTGGAATGGGCCAATAATAATAACCAAGGCTTTGATGATTTCAAGCCATTCTATAATGTTGGTGAGAAAAGAGGTTCTTCCACTCGACCATCTGAGCAGGAAAGGAAAAAAGGAGTGCCATGGACTGAAGAGGAGCACAGGCAATTTCTGAAGGGACTGAAGAAGTATGGTAAAGGGGATTGGAGAAACATATCTCGTAATTTTGTGACTACAAGGACTCCTACTCAGGTTGCTAGTCATGCTCAGAAGTATTTTATTAGGCAGCTTACAGGAGGCAAGGACAAGAGGAGATCAAGCATCCATGACATAACAATTGTCAACCTCGAAACTAAGTCTTCATCGTCGTCTCCTTCATCAGACACTCACAGGCCTTCTCCTCCTCCTGATCGCTCGGTGAAGGTTGTGAATGATCATCTGCCTAATAAGAATCCGAATTTCCCTACCATGATGCTTAAACAGGAGTTTGACTCGAATTCGCCATTCGAGTCCATGTCAATGATTTTCAATTCAGCAAATGGAAACATGTTCATGCCACCACCGTATTTTGGGTTTTCTTCAGTTGGATCTGGACCTCAGGAGCAGTGTTTACTCAGAGGTTCTCTCTGA 903 0.4319 MNRGIEVFSPASYLENSNWLFQESKGSKWTPEENKRFEDALALYDKDAPDRWLKVAAKVPGKTVGDVIRQYKQLEEDVSVIEAGLIPVSEYDDNNSSFTLEWANNNNQGFDDFKPFYNVGEKRGSSTRPSEQERKKGVPWTEEEHRQFLKGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITIVNLETKSSSSSPSSDTHRPSPPPDRSVKVVNDHLPNKNPNFPTMMLKQEFDSNSPFESMSMIFNSANGNMFMPPPYFGFSSVGSGPQEQCLLRGSL 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0181 300 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 259 IPR043363 -
Acco09g0181 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 188 IPR017930 -
Acco09g0181 300 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Acco09g0181 300 MobiDBLite consensus disorder prediction 126 142 - -
Acco09g0181 300 Gene3D - 138 188 - -
Acco09g0181 300 MobiDBLite consensus disorder prediction 207 244 - -
Acco09g0181 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 135 187 IPR006447 GO:0003677
Acco09g0181 300 Gene3D - 21 88 - -
Acco09g0181 300 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Acco09g0181 300 ProSiteProfiles Myb-like domain profile. 132 184 IPR001005 -
Acco09g0181 300 ProSiteProfiles SANT domain profile. 140 188 IPR017884 -
Acco09g0181 300 CDD SANT 139 184 IPR001005 -
Acco09g0181 300 CDD SANT 28 74 IPR001005 -
Acco09g0181 300 MobiDBLite consensus disorder prediction 122 142 - -
Acco09g0181 300 FunFam transcription factor MYB1R1 138 189 - -
Acco09g0181 300 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Acco09g0181 300 Pfam Myb-like DNA-binding domain 139 184 IPR001005 -
Acco09g0181 300 FunFam Transcription factor SRM1 21 88 - -
Acco09g0181 300 SUPERFAMILY Homeodomain-like 133 187 IPR009057 -
Acco09g0181 300 SMART sant 25 77 IPR001005 -
Acco09g0181 300 SMART sant 136 186 IPR001005 -
Acco09g0181 300 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0181 Acco-ChrAcco09 2001127 2002527 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco09g0181 Myb_DNA-binding 1.6e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco09g0181 09 2001127 2002527 Acco09g0181 09 2001127 2002527 ECH
Acco09g0181 09 2001127 2002527 Acco05g1533 05 31509770 31510856 ECH
Acco05g1533 05 31509770 31510856 Acco09g0181 09 2001127 2002527 ECH