Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0171 ATGCTTCAGATTCGGCTTAGTAAGTTACCAGCCTCGGAAGGATCATCAGGGCTGAGATCCGCACCTGTTGAGACTGCAATTGCATGCCCTGAACATCTAGTCTTGGCTGACCTACCTGTAGCAAAGGGCATCGGTTCAGCCACTGCCACTTCCCTTATTAAGACTGTAGGACGAAGGTCTCGCCGCCAACTTGGCAATAGAGTTCATTTCTGTGTTCGTTGTGATTTTCCTATAGCTATCTATGGACGATTGAGCCCTTGTGAGCATGCCTTCTGCCTTGATTGTGCTAGAAGTGATCCAATGTGCTGCCTGTGCGATGAACGAATCCATAAGATTCAAACCATCAAAATGATGGAAGGAATTTTTGTTTGTGCTGCTCCTCATTGTCTCAAGTCTTTCTTGAAGAAGACTGAATTCGAATCTCACATCCAAGAAAACCATTGGGATCTTCTTGTGCGTAATGCAGAGAGAGAAGATGGAAATGAATCAGAGGCACAGAGTGCTGGGCAATCTACAGCATCAGACTCCACCGCTCGAGGTCCCCCTAGGCCCCTTTTTTCTCCTGGTTCAAAGTCACAGCTTCATGATTGGGATGACAAAAGCCGTCAACATCCAATAAGAGAGCAGCCCCCTTCAAGGCCAATTCAACAGCAAAAGCCACCATTTTTTGGTCAAGCACCTAATCCTTCTTTGGGTCCCCAATCAGGCAACAATGGAGCTATTCAACAGGACTTCCATCCACAAGGTTTTGAGAGACAACAAGGAGTTACTTCAGAGACCCCAATGCGTGATTATCCTCACAATGTTGCCATGCAAGTTAATCCTAACGCATTGCCAAAACCTCCAATGGCATATAGTTACCCCCCTTACCCACAAGAGGGAGCTCACCCCTTTTATGCTTCATCTTATGACATGCCTAGACAGAACTCAAATTCTGAAATAGGTTTAGATCAGGGTTCATTACTGGGATACCCACCAGGTCCTGTAGGTGGCCCAAATTTTCCAGCAAATTATGCTCAGGCCTGGAATGCTGGAATGACTGGTATTGTACCTTTTGATCGAGCTCAGGGTGGTATGATTTTTTATCCAAGGGATGCTAAAGGAACTTAG 1110 0.4595 MLQIRLSKLPASEGSSGLRSAPVETAIACPEHLVLADLPVAKGIGSATATSLIKTVGRRSRRQLGNRVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDPMCCLCDERIHKIQTIKMMEGIFVCAAPHCLKSFLKKTEFESHIQENHWDLLVRNAEREDGNESEAQSAGQSTASDSTARGPPRPLFSPGSKSQLHDWDDKSRQHPIREQPPSRPIQQQKPPFFGQAPNPSLGPQSGNNGAIQQDFHPQGFERQQGVTSETPMRDYPHNVAMQVNPNALPKPPMAYSYPPYPQEGAHPFYASSYDMPRQNSNSEIGLDQGSLLGYPPGPVGGPNFPANYAQAWNAGMTGIVPFDRAQGGMIFYPRDAKGT 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0171 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 147 IPR013087 -
Acco09g0171 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 122 IPR013083 -
Acco09g0171 369 MobiDBLite consensus disorder prediction 164 178 - -
Acco09g0171 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 353 IPR040383 GO:0016567|GO:0061630
Acco09g0171 369 MobiDBLite consensus disorder prediction 157 244 - -
Acco09g0171 369 ProSitePatterns Zinc finger C2H2 type domain signature. 124 147 IPR013087 -
Acco09g0171 369 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Acco09g0171 369 MobiDBLite consensus disorder prediction 210 244 - -
Acco09g0171 369 MobiDBLite consensus disorder prediction 193 207 - -
Acco09g0171 369 CDD RING-HC_HAKAI-like 69 118 IPR040380 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0171 Acco-ChrAcco09 1868510 1870888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0171 1 346 C2H2 Transcription Factor Family AT5G01160 48.901 5.65e-96 288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco09g0171 09 1868510 1870888 Acco09g0171 09 1868510 1870888 ECH