Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0145 ATGAAAAGTTCAAAACTGTGGTCGTTGGGAATCAGCAGGCAGAAAGGAGGCTACAGGCATATCAACAAAATTCACATTATTTTTCACGACAGAGGAAAATGGGTAAAGCCTGACACGACTATCCCAAAGAAACGTCAAATAAAGCTAAAGGTACCGCAAGATTTGGAGCAGGGAAGCTACGGCCGTAACATGACTGGTGAGGTTAGCATTAGTCTCTCTAGGGCTAGAGATAGAGAGTGTAGGATTTGTCTCATGGGTTTGGAGAGTTATAGGCATGTATATGGGGTTCCGATTGAATTGGGTTGTTCCTGCAAGCATGATCTTGCTGCTGCTCATAAACTCTGTGCTGAAACCTGGTTCAGAAGTCAAGGGAACAGGACCTGTGAAATCTGTCATTCTATGGCACGGAATGTTTTTGCAACAAATAAGGAGACACCTAAGAATTTAAGGGACAACAACAACGTTATAATAGTATCCAGAACTCTATCAGAAACTCCTCCAAGTTTTTGTCCAGAAGATCATCCCTTCCTCCTGACATTTTGTGTATTTTTCATCTCAGTGACCATCACGGTGGTGCTCGTATGGGCGCTCGGATGATTTGGAGCAGGGAGCCACGGTTGTGACATGATCGAGGAGGCTAGCATTAGTCTCTCTGAGGCTAGAGATAGAGAGTGTAGGATTTGTCTCATGGGTTTGGAGAGTGATAGGCATGTATATGGGGTTCCGATTGAATTGGGTTGTTCTTGCAAGCATGATCTTGCTGCTGCCCATAAATTCTGTGCTGAAACCTGGTTTAGAAGTCAAGGGAACAGGGACCTCAAACCCTCTCTTCAATTTCTTTCAAATCTAAGTTTCTATGCTTGA 864 0.4387 MKSSKLWSLGISRQKGGYRHINKIHIIFHDRGKWVKPDTTIPKKRQIKLKVPQDLEQGSYGRNMTGEVSISLSRARDRECRICLMGLESYRHVYGVPIELGCSCKHDLAAAHKLCAETWFRSQGNRTCEICHSMARNVFATNKETPKNLRDNNNVIIVSRTLSETPPSFCPEDHPFLLTFCVFFISVTITVVLVWALGXFGAGSHGCDMIEEASISLSEARDRECRICLMGLESDRHVYGVPIELGCSCKHDLAAAHKFCAETWFRSQGNRDLKPSLQFLSNLSFYA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0145 287 ProSiteProfiles Zinc finger RING-CH-type profile. 217 283 IPR011016 GO:0008270
Acco09g0145 287 SMART ringv_2 79 132 IPR011016 GO:0008270
Acco09g0145 287 SMART ringv_2 224 271 IPR011016 GO:0008270
Acco09g0145 287 SUPERFAMILY RING/U-box 75 135 - -
Acco09g0145 287 Pfam RING-variant domain 225 269 IPR011016 GO:0008270
Acco09g0145 287 Pfam RING-variant domain 80 131 IPR011016 GO:0008270
Acco09g0145 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 142 IPR013083 -
Acco09g0145 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 277 IPR013083 -
Acco09g0145 287 SUPERFAMILY RING/U-box 219 270 - -
Acco09g0145 287 ProSiteProfiles Zinc finger RING-CH-type profile. 72 138 IPR011016 GO:0008270
Acco09g0145 287 PANTHER ZINC FINGER, RING-CH-TYPE 214 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0145 Acco-ChrAcco09 1655642 1661815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0145 210 271 C3H Transcription Factor Family AT5G05830 58.065 8.13e-17 75.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco09g0145 09 1655642 1661815 Acco09g0145 09 1655642 1661815 ECH