LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco09g0105	ATGGTGCAATATAGGTTTCCTGCAACAACCTTAATCTTCACGATGGCGGTGCTACTATCTTGTGCCGGCGGCAGCAAGGCACGGCAATGCCTCAACTGCGGGTCAAATCCAGTTCCATACCCGTTAAGTACCGGACCCGACTGTGGCCATCCGATGTACAATATTAAGTGCATAAAGGGCAATTTGTGGTTTGATGCCCTCGGTGGATCATCTTACATGATAAAGTCCATCAACCCATTGACTCGACGGGTCATTTTACGACCCGCAGGCATCGACCCGAGGGCGTGTGTGTCCACGGACTTCCGCAGCGAAGGCATACACCTTAACAAAGCCCTTCCCTTTAAAATCACCAGCAATAACACCGTCTTTCTGTACAACTGTACGGACGTGATGCTGAAATCAAAACCGCCCTTGAATTGTTCACCTAACTGCCTGTGTCATAGCTACATTAAGGACCATGCAGAAGGTGGTGGCGCGTGCAAGAGCGTGGGGTTGTGTTGCAGCTTCAGAACTGATAAACCGTTCCCGGAGGACATGGTAAGGGTGCATGGGGGAGAGTGTGCTGCATATCAGAGTTTTGTGAATCTCAATGTGGCTGTGGCGGCCGCTCCCCAGCCGAATAAGTGGCCAGAGCCCGGGATAGAGCTGGAGTGGGTGATGCCGGAGGAGCCAGTTTGCAAGGGCCCGATTGATTGCAAGGAGTTGTTGAATTCCCAGTGTTTAAAGGATCCGATCAATGCTCAGCAAATGAAGTGCCTTTGCAATGTTGGCTTCAAGTGGGACTCCAGCAATGGTTTGTGTCAACTTAGTCAAAATCAAGCAAAAACTGTGGGAGCTTCCTTGGGAGCCATAGTACTCATGGCACTGATAGCGAGCATTGTTCTATTCAAGAAGCATGACAAATCAAAGAAACAAGCCGAAAGGAAGCTAACGAAGCAAAAAGAAAGAATCTTCTTAAGCGCCAAAGACAACTGTGGGCTATCAGCAAGGATCTTCACAATGAGAGAGATAAAGAAAGCAACCAACAACTTCTCACGAGACAAACTTATCAGCACGGGCGGCTTCGGAGAGGTCTTCAAAGGAACCTTCGACGACGGCACCGTCATCGCCGTCAAACGAGCTAAGCTCGGCAACACCAAAGCCCTCGACCAAATCCTCAACGAGGTGCGAATCCTGTGCCAAGTCAACCACCGTAACCTCGTACGCCTCCTAGGTTGTTGTGTCGAACTAGACCACCAACCCCTTCTCATTTATGAATATATCCCCAATGGCACCCTCTTCGACCAACTCCATACGCACCGTTTTGATCCTCCTCTCAATTGGCTTCTCAGGCTCAAAATCGCCCACCAAACAGCTCAAGCTCTGTATTATCTTCACTCTTCAGCATTGCCTCCTATATACCATAGGGACGTAAAATCAAGCAATATACTGTTAGATGATAAGTTAGATGCTAAAGTCTCAGACTTTGGGCTATCTAGGCTTGTTGAGATAGCTGAGGCGGATAAAAGTCATATCTTTACCAGTGCACAGGGGACATTAGGGTATCTTGATCCGGAGTATTATCGTAACTTTCAGCTGACTGATAAGAGTGATGTGTATAGTTTTGGGGTGGTGTTGTTGGAGATTCTGACGCGTGAGAAGGCTATTGATTTTAACAGGGAAGAGGAGAATGTGAACTTGGTGGTTTATGGGAAGAAGATGATGAAGGAAGAGAGGTTTGTGGACATGGTGGATCCTGTGTTGAAGGATGGAGCCAGTAACTTGGAGTTGGAGACGATCAAGTCTCTGGGGTTTCTTGCGGTGGCTTGCTTGGATGAGCAGAGGCAAAATCGGCCTTCCATGAAGGAAATTTCCGATGAGATTGAGTACCTTATTAGTATTCTTTCTCATGATGTTCCCAAGACAAAGGTGTAA	1914	0.4781	MVQYRFPATTLIFTMAVLLSCAGGSKARQCLNCGSNPVPYPLSTGPDCGHPMYNIKCIKGNLWFDALGGSSYMIKSINPLTRRVILRPAGIDPRACVSTDFRSEGIHLNKALPFKITSNNTVFLYNCTDVMLKSKPPLNCSPNCLCHSYIKDHAEGGGACKSVGLCCSFRTDKPFPEDMVRVHGGECAAYQSFVNLNVAVAAAPQPNKWPEPGIELEWVMPEEPVCKGPIDCKELLNSQCLKDPINAQQMKCLCNVGFKWDSSNGLCQLSQNQAKTVGASLGAIVLMALIASIVLFKKHDKSKKQAERKLTKQKERIFLSAKDNCGLSARIFTMREIKKATNNFSRDKLISTGGFGEVFKGTFDDGTVIAVKRAKLGNTKALDQILNEVRILCQVNHRNLVRLLGCCVELDHQPLLIYEYIPNGTLFDQLHTHRFDPPLNWLLRLKIAHQTAQALYYLHSSALPPIYHRDVKSSNILLDDKLDAKVSDFGLSRLVEIAEADKSHIFTSAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLLEILTREKAIDFNREEENVNLVVYGKKMMKEERFVDMVDPVLKDGASNLELETIKSLGFLAVACLDEQRQNRPSMKEISDEIEYLISILSHDVPKTKV	637

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco09g0105	637	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	466	478	IPR008271	GO:0004672\|GO:0006468
	Acco09g0105	637	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	21	-	-
	Acco09g0105	637	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	26	624	IPR045274	GO:0007166
	Acco09g0105	637	ProSiteProfiles	Protein kinase domain profile.	344	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco09g0105	637	SMART	serkin_6	344	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco09g0105	637	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	316	420	-	-
	Acco09g0105	637	Coils	Coil	296	316	-	-
	Acco09g0105	637	SUPERFAMILY	Protein kinase-like (PK-like)	328	626	IPR011009	-
	Acco09g0105	637	Gene3D	Phosphorylase Kinase; domain 1	318	420	-	-
	Acco09g0105	637	Pfam	Protein tyrosine and serine/threonine kinase	347	620	IPR001245	GO:0004672\|GO:0006468
	Acco09g0105	637	CDD	STKc_IRAK	350	622	-	-
	Acco09g0105	637	Gene3D	Transferase(Phosphotransferase) domain 1	421	631	-	-
	Acco09g0105	637	FunFam	Wall-associated receptor kinase-like 20	421	634	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco09g0105	Acco-ChrAcco09	1126513	1129509	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco09g0105	15	635	Receptor kinase-like Gene Family	AT5G02070	54.615	0.0	696

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Acco09g0105		PK_Tyr_Ser-Thr	9.4e-44	CL0016