Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0081 ATGGCTTCAGTTGGATCCTCCTATTGGTGCTACAGATGCAATCTGTTTGTTAGGGTTAGAATTGGGGCTGAAGAGGCCTTGCTTTGCCCTGATTGTGGGTCTGGTTTCATAGAAGAAATCAGGACTCGTACTCACCCTCCTTTCCATCGATTCCCTTCACCGTCAATGTACGCCGACGATGAGTCTATCTCCGAGCAAGGAGCCAGCCCAAGGATCCGCCGTGGCCCAAGGAACGCCGGCGATCGATCCCCTTTTAACCCTGTTATCGTCCTTAGTGGACCGGTCGACGGCGGTGGCGGTGGAAATGAAGGGGTTGGGATTGAAAGAGGGAACTTTGAGCTTTATTACAATGAAGGTACAGGTTCGGGTCTTCGGCCGCTTCCTGCAAGTGTCACAGAGTTCTTAATGGGTGCTGGATTTGACCACCTTCTTGACCAGTTGACTCACTTAGAAGTCACAGGAATCGGACGATTACATCAAACTCCGGCATCAAAATCTGCAATTGAGTCGATGCCCATCGTCAAGATTATTGCCACACATGTTTCGGCGGAATCACATTGTGCAGTTTGTAAGGAACCCTTCGAGCTTGACTCGGACGCTCGTGAAATGCCTTGTAAGCACATTTACCATTCTGATTGTATCCTTCCGTGGCTTTCAATTCGTAATTCCTGTCCAGTTTGTCGCCATGAGCTACCTACTGAGATGCGTGGGAGTAGTACTAGTAGTGGCAGAAACTCCCCTATGTCTGACGGTGGAAGGGATGATCATACTGTGGGATTAACTATATGGAGACTACCTGGTGGTGGTTTTGCTGTAGGAAGGTTCACCGGTGGAAGAAGAGCCGCCGAACGTGAACTTCCTGTTGTATATACAGAAATGGATGGTGGATTCAATAGTGTTGGGGTTCCTCGGAGGATATCTTGGGAAACAAGTGTGAGGAGATCAAGAGAGTCTCGGGGATTAGGTAATGCTTTCCGAAACTTCTTCTCACACTTTGGGTGGCTTAGGACTTCCTTCTCTCGTTCTTCAAGAACTGATTCAAATGTGAGAGGAAGAACAAGATCTAATACATTATTATCTAGATTCTCAAGAAGGCGCAACTAG 1104 0.4792 MASVGSSYWCYRCNLFVRVRIGAEEALLCPDCGSGFIEEIRTRTHPPFHRFPSPSMYADDESISEQGASPRIRRGPRNAGDRSPFNPVIVLSGPVDGGGGGNEGVGIERGNFELYYNEGTGSGLRPLPASVTEFLMGAGFDHLLDQLTHLEVTGIGRLHQTPASKSAIESMPIVKIIATHVSAESHCAVCKEPFELDSDAREMPCKHIYHSDCILPWLSIRNSCPVCRHELPTEMRGSSTSSGRNSPMSDGGRDDHTVGLTIWRLPGGGFAVGRFTGGRRAAERELPVVYTEMDGGFNSVGVPRRISWETSVRRSRESRGLGNAFRNFFSHFGWLRTSFSRSSRTDSNVRGRTRSNTLLSRFSRRRN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0081 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Acco09g0081 367 CDD RING-H2_RNF126-like 187 228 - -
Acco09g0081 367 MobiDBLite consensus disorder prediction 234 248 - -
Acco09g0081 367 SMART ring_2 187 227 IPR001841 -
Acco09g0081 367 Pfam zinc-ribbon 7 40 IPR039525 GO:0061630
Acco09g0081 367 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Acco09g0081 367 MobiDBLite consensus disorder prediction 342 367 - -
Acco09g0081 367 Pfam Ring finger domain 186 228 IPR001841 -
Acco09g0081 367 SUPERFAMILY RING/U-box 167 234 - -
Acco09g0081 367 Pfam Protein of unknown function (DUF1117) 258 361 IPR010543 -
Acco09g0081 367 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Acco09g0081 367 FunFam E3 ubiquitin-protein ligase RING1-like 149 234 - -
Acco09g0081 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 83 232 - -
Acco09g0081 367 MobiDBLite consensus disorder prediction 47 83 - -
Acco09g0081 367 MobiDBLite consensus disorder prediction 233 253 - -
Acco09g0081 367 MobiDBLite consensus disorder prediction 342 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0081 Acco-ChrAcco09 799010 800113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0081 126 236 C3H Transcription Factor Family AT5G01980 45.045 2.18e-25 105