Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0032 ATGCCAAGGCCGAGGCGATTCTTGAGTAACCACAACAATTTTCACCACCAAATGTCGAGGCAGCAATCTTTCTCTCTTCTTCATCTTCCCTTCTTCAACCTTCTTTTCCTGCTCCTTCCTCTTCTTTCTACTTCTTCAAACAATAATGAAGCTCAAGTTCTACTTTCATGGCTCCACACTTCCTCCTCCTCTGTTCCTCCTTCGTCTTTCCCTGATTGGAACCCTTCAAACCCCAACCCTTGTAACTGGTCTTTCATCAAATGCTCTTCACGAAACTTTTTCACAGAGATAAACATTCAAGCAACTGAATTAGCGCTTCCTTTTCCTCCCAACATTTCAGCTTTTCCCTTTCTTCAGAAACTTGTCATTTCAGGGGCTAATCTTTCTGGGCTGATCTCGCCTGATATTGGAAACTGCCCTCAGCTTATAACCATTGATCTTAGCTCAAATAATCTTGCTGAGCTTGGTGATTGTGTTAGTTTGAGGAACCTTGATATTTACGATAACAATCTTAGTGGAGTTCTTCCTGCTGAGTTGGGAAAGCTTTCAAATCTGGAGGTTATAAGAGCCGGAGGGAACAATGGCATCGCGGGGAAGATTCCCAATGCTCTTGGTGATTGCAGGAATTTGACTATATTAGGACTGGCTGACACTAAAATCTCAAGTTCATTACCTCCTTCTTTAGGTAATTTAAGGTTTCTTCGGACAATTTCTATTTATAATACTATGCTGTCTGGTAAGATTCCTCCTGAGATAGGAAATTGCTCTGAACTGGTGAACCTGTTTTTGTATGAGAATGAGCTGTTTGGTTCATTGCCAAAAGAGCTGGGTAAGCTTCATAGGCTTGAGAAAATGTTGTTGTGGCAGAACAAGTTTGCTGGAAGCATCCCTCAAGAAATTGGTAACTGTGGAAACTTGAAGATTCTTGATGTTTCTTTGAACTCTTTGTTTGGAACCATACCTACTACTTTTGGAAACCTCACGAATCTTGAAGAGCTCATGTTAAGTAACAATAACTTATCCGGTTCAATCCCGCCTGTTCTTTCCAATCTGTCGGAACTCATACAGCTTCAGGTAGATACTAATCAAATATCAGGTTCAATTCCTGCTGAACTTGGAAAGTTGAAGAAGCTGACTGTCTTTTTTGCTTGGCAAAATAAACTTGAAGGAAGCATTCCTTCTGAATTGGGTGGTTGTGCTAGCATAGAAGCTCTTGATTTGTCATATAATTCGCTCACTGATAGCTTACCTCCAAGCTTATTTGAGCTTCAAAATTTGACAAAACTTCTGCTAATCTCTAACCATCTTTTTGGGCCTATACCCCGTGAAATTGGTAATTGTAGTTCTCTCATTCGACTACGACTTCTGAACAACCAAATTGGTGGAGAGATTCCAAGAGAACTTGGTTTTCTCAACAAATTGAGCTTTCTTGATCTGTCAGAGAATAATCTTACTGGTTTAGTGCCATTGGAGCTAGGAAATTGCAAGGAACTGCAAATGCTAAACCTTAGCAATAACTCCCTTTCTGGTATGTTACCTAGTTCTTTATCTTCCCTCACAAGGCTTGAGGTTTTCGATGTTTCTCTTAATCACTTTTCTGGTGAAGTTCCTTCAAGTATAGGCCAACTCACTTCACTTAGCAGGCTTATCCTTAGCAGAAACTCATTCTCTGGATCAATACCCTCATCACTAGGTCTTTGTTCAAGTCTTCAACTACTAGATCTTAGTAGCAACAATCTCTCAGGGATCATCCCATTAGAACTATTTGATATAGAAGCACTTGACATTGCTCTGAATTTGAGTCACAACGTATTATCTGGAGTAATCCCACCGCAGGTTTCTTCCCTAAATAAGCTTTCTGCTCTAGACCTTTCGCACAACAAGCTTGAAGGAGATCTGGTGGCACTTTCAGGACTTGAAAATCTTGTTTCTCTAAACATCTCCTTCAACATGTTCACCGGCTATCTCCCGGACATCAAGTTATTCCACCAACTGTCACCAACAGATGTGGAAGGAAATCAGGGCTTGTGTCCAAGTGGCCGAGATTCATGCTTCATCAGCAATTCTGCAATGACAAAAATGCAAAATAATAGTGATTCTAAGAGGGCTGAGAGAATCAAATTGGGCATAGGATTGCTAAGCGCCTTCACCATTGCAATGGCAATCTTTGGGATTCTTACAGTGCTCCGAGCAAAGAAAATGGCTCAGGATGACAATGATTCTGAGATGGGAGGGGATTCATGGCCTTGGCAGTTCACACCATTTCAAAAATTAAACTTCTCCATCAATCAAGTTCTAAAATGCTTAGTAGACTCTAATGTGATAGGAAAGGGGTGTTCTGGGGTTGTTTATCGTGCAGAACTGGAAAATGGCGATGTCATTGCCGTGAAAAAACTATGGCCAACAGCAATGGCTGCTAGATATGATTGCCAAAATGACAAGCTAGCGGTTCAGGGAGGAGGAGTTCGTGATTCCTTCTCAGCTGAGGTTAAAACCCTGGGTTCCATTCGACACAAGAACATTGTGAGGTTCCTTGGATGCTGTTGGAATCGAAATACTAGGCTGCTTATGTATGACTACATGCCAAATGGCAGCCTAGGAAGCTTGCTGCATGAACGAAGTGGTGGAAACTGCTTGGAGTGGGACATCAGGTATCGGATATTGCTGGGAGCAGCTCAAGGATTGGCCTATCTTCACCATGATTGTGCTCCTCCCATTGTTCACAGGGACATCAAGGCCAACAATATTCTCATAGGTCCTGATTTTGAGCCATACATTGCTAATTTTGGGCTTGCCAAACTTGTTGATGATGGAGATTTTGCAAGATCCTCTAGCACACTGGCTGGTTCCTATGGCTATATTGCTCCTGAATATGGATACATGATGAAGATTACAGAGAAAAGTGATGTGTATAGCTATGGGATTGTTGTGTTGGAAGTGCTAACAGGGAAGCAACCAATTGACCCAGCAATACCAGATGGGCTCCACATTGTTGACTGGGTAAGACAGAAAAGAGGAGGTGGAAGTGAAGTGCTGGACCCAAGCCTATGTGCAAGGACTGAACCTGAAATAGAAGAAATATTGCAGACTTTGGGGGTGGCTTTGCTGTGTGTGAACCCTAGCCCAGAAGATAGGCCAACCATGAAGGACGTGGCTGCGATGCTCAAAGAGATCAGGCAAGAAAGGGAAGAATATAGGAAAGTTGATGGGCTTCTTCACGGATCTTCTGCAAATGAAGAAGATAATAATACTAATAATCATTCAAGTGAAGAGCCAAGAGGGAATATGATGAAGCATTCGTACCCAATAAACAGCAACAACACAAGTTTCTCTGCCTCTCTTCTTGTGTCTCCTTCATCCTCCAATACCCAAGTCACATTCAAATAG 3387 0.4207 MPRPRRFLSNHNNFHHQMSRQQSFSLLHLPFFNLLFLLLPLLSTSSNNNEAQVLLSWLHTSSSSVPPSSFPDWNPSNPNPCNWSFIKCSSRNFFTEINIQATELALPFPPNISAFPFLQKLVISGANLSGLISPDIGNCPQLITIDLSSNNLAELGDCVSLRNLDIYDNNLSGVLPAELGKLSNLEVIRAGGNNGIAGKIPNALGDCRNLTILGLADTKISSSLPPSLGNLRFLRTISIYNTMLSGKIPPEIGNCSELVNLFLYENELFGSLPKELGKLHRLEKMLLWQNKFAGSIPQEIGNCGNLKILDVSLNSLFGTIPTTFGNLTNLEELMLSNNNLSGSIPPVLSNLSELIQLQVDTNQISGSIPAELGKLKKLTVFFAWQNKLEGSIPSELGGCASIEALDLSYNSLTDSLPPSLFELQNLTKLLLISNHLFGPIPREIGNCSSLIRLRLLNNQIGGEIPRELGFLNKLSFLDLSENNLTGLVPLELGNCKELQMLNLSNNSLSGMLPSSLSSLTRLEVFDVSLNHFSGEVPSSIGQLTSLSRLILSRNSFSGSIPSSLGLCSSLQLLDLSSNNLSGIIPLELFDIEALDIALNLSHNVLSGVIPPQVSSLNKLSALDLSHNKLEGDLVALSGLENLVSLNISFNMFTGYLPDIKLFHQLSPTDVEGNQGLCPSGRDSCFISNSAMTKMQNNSDSKRAERIKLGIGLLSAFTIAMAIFGILTVLRAKKMAQDDNDSEMGGDSWPWQFTPFQKLNFSINQVLKCLVDSNVIGKGCSGVVYRAELENGDVIAVKKLWPTAMAARYDCQNDKLAVQGGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGGNCLEWDIRYRILLGAAQGLAYLHHDCAPPIVHRDIKANNILIGPDFEPYIANFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPAIPDGLHIVDWVRQKRGGGSEVLDPSLCARTEPEIEEILQTLGVALLCVNPSPEDRPTMKDVAAMLKEIRQEREEYRKVDGLLHGSSANEEDNNTNNHSSEEPRGNMMKHSYPINSNNTSFSASLLVSPSSSNTQVTFK 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0032 1128 Gene3D Phosphorylase Kinase; domain 1 753 860 - -
Acco09g0032 1128 ProSiteProfiles Leucine-rich repeat profile. 473 494 IPR001611 GO:0005515
Acco09g0032 1128 SMART LRR_typ_2 423 447 IPR003591 -
Acco09g0032 1128 SMART LRR_typ_2 543 567 IPR003591 -
Acco09g0032 1128 SMART LRR_typ_2 139 162 IPR003591 -
Acco09g0032 1128 SMART LRR_typ_2 327 351 IPR003591 -
Acco09g0032 1128 SMART LRR_typ_2 471 494 IPR003591 -
Acco09g0032 1128 SMART LRR_typ_2 495 518 IPR003591 -
Acco09g0032 1128 SMART LRR_typ_2 279 303 IPR003591 -
Acco09g0032 1128 SUPERFAMILY RNI-like 271 653 - -
Acco09g0032 1128 Gene3D Ribonuclease Inhibitor 514 596 IPR032675 -
Acco09g0032 1128 ProSitePatterns Serine/Threonine protein kinases active-site signature. 906 918 IPR008271 GO:0004672|GO:0006468
Acco09g0032 1128 MobiDBLite consensus disorder prediction 1076 1091 - -
Acco09g0032 1128 ProSiteProfiles Protein kinase domain profile. 769 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco09g0032 1128 Coils Coil 1048 1068 - -
Acco09g0032 1128 ProSiteProfiles Leucine-rich repeat profile. 618 640 IPR001611 GO:0005515
Acco09g0032 1128 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 861 1073 - -
Acco09g0032 1128 Gene3D Transferase(Phosphotransferase) domain 1 861 1076 - -
Acco09g0032 1128 SUPERFAMILY Protein kinase-like (PK-like) 754 1055 IPR011009 -
Acco09g0032 1128 MobiDBLite consensus disorder prediction 1071 1104 - -
Acco09g0032 1128 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 752 860 - -
Acco09g0032 1128 FunFam Predicted protein 174 274 - -
Acco09g0032 1128 PRINTS Leucine-rich repeat signature 474 487 - -
Acco09g0032 1128 PRINTS Leucine-rich repeat signature 616 629 - -
Acco09g0032 1128 Pfam Protein kinase domain 772 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco09g0032 1128 SMART LRR_sd22_2 158 187 - -
Acco09g0032 1128 SMART LRR_sd22_2 327 353 - -
Acco09g0032 1128 SMART LRR_sd22_2 567 588 - -
Acco09g0032 1128 SMART LRR_sd22_2 616 641 - -
Acco09g0032 1128 SMART LRR_sd22_2 375 407 - -
Acco09g0032 1128 SMART LRR_sd22_2 471 492 - -
Acco09g0032 1128 ProSiteProfiles Leucine-rich repeat profile. 329 352 IPR001611 GO:0005515
Acco09g0032 1128 ProSiteProfiles Leucine-rich repeat profile. 569 590 IPR001611 GO:0005515
Acco09g0032 1128 Pfam Leucine rich repeat 305 364 IPR001611 GO:0005515
Acco09g0032 1128 SUPERFAMILY L domain-like 68 365 - -
Acco09g0032 1128 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 401 688 - -
Acco09g0032 1128 ProSitePatterns Protein kinases ATP-binding region signature. 775 798 IPR017441 GO:0005524
Acco09g0032 1128 Gene3D Ribonuclease Inhibitor 398 513 IPR032675 -
Acco09g0032 1128 SMART serkin_6 769 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco09g0032 1128 Gene3D Ribonuclease Inhibitor 46 192 IPR032675 -
Acco09g0032 1128 Gene3D Ribonuclease Inhibitor 193 296 IPR032675 -
Acco09g0032 1128 Gene3D Ribonuclease Inhibitor 297 397 IPR032675 -
Acco09g0032 1128 Gene3D Ribonuclease Inhibitor 597 684 IPR032675 -
Acco09g0032 1128 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 275 383 - -
Acco09g0032 1128 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 433 1056 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0032 Acco-ChrAcco09 345215 348765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0032 48 1070 Receptor kinase-like Gene Family AT5G56040 45.182 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Acco09g0032 Pkinase 2.2e-36 CL0016