Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g0030 ATGCAGATCTGTGTTTCTGTACAATTCTTGGCCCTCGCCTCTGTGCTTCTGCCCCTGCTTTTCCCTCTCGCCATCGCCCACAGGTTCAATGATTCTTCCAATGAGCGTGCAGTACAAAATCCTGAGGAGATAGCCTCTACGCTTACCATGAGTATACGCAATCAGACGGAAAGAAGGAATTTGGGTTTCTTCTCTTGTACGACGGGGAATCCCATCGACGACTGCTGGCGGTGTGACCGCAACTGGCAGAGCCACCGCAAACAGCTGGCCAATTGCGCCATAGGGTTTGGACGCAATGCCATCGGAGGCCGAGACGGAAAGTACTACGTCGTGACTGACCCCGGCGACGACGACGCCGTCAACCCAAAACCAGGCACCCTCCGCTACGCCGTCATCCAAGACGAGCCCTTGTGGATCGTGTTCAAAAGGGACATGGTCATCACTCTCAAGCAAGAGCTCATCATGAACAGCTTCAAGACCATCGACGGCCGCGGCGTCAACGTCCACATTGCTTATGGGGCCTGCATCACCATCCAATACGTCACCAACGTCATCATCCACGGCCTCCACATCCATGACTGCAAGCAAACCGGCAACGCCATGGTCCGTAGCTCGCCGTCGCATTACGGATGGAGGACCCTGTCCGACGGAGACGGGATTTCCATCTTCGGTTCGAGCCACCTCTGGATCGATCACAACTCACTCTCTAAATGCTCAGATGGTCTTATTGATGCCATCATGGGTTCAACTGCCATTACCATCTCCAACAATTACTTCACTCACCACAATGAGGTCATGCTTTTGGGTCACAGTGACTCTTACGTCCGAGATAAGGAGATGCAAGTGACCATTGCCTACAACCATTTTGGGGAGGGCCTTATTCAGAGAATGCCAAGGTGCAGACACGGGTATTTCCATGTGGTCAACAATGACTACACTCATTGGGACATGTATGCAATTGGTGGTAGTGCAGAGCCCACCATTAACAGCCAGGGAAATCGATTCCTTGCCCCTCAGAACGCTTTTGCTAAGGAGGTGACAAAGAGAGTTGACACAGATGAAGGAGTGTGGAAAAGTTGGAACTGGAGGTCAGAGGGAGACCTTTTGCTGAATGGTGCCTTCTTCACTTCATCAGGTGCTGGCTCTGGAGCTAGCTATGCCAGAGCTTCAAGTTTATCAGCCAAATCGTCTTCCTTGGTGGGTACCCTCACCTCTGGTGCCGGTGTTCTTAGCTGCCAGAGGGGTTCTATGTGTTAA 1257 0.5219 MQICVSVQFLALASVLLPLLFPLAIAHRFNDSSNERAVQNPEEIASTLTMSIRNQTERRNLGFFSCTTGNPIDDCWRCDRNWQSHRKQLANCAIGFGRNAIGGRDGKYYVVTDPGDDDAVNPKPGTLRYAVIQDEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQYVTNVIIHGLHIHDCKQTGNAMVRSSPSHYGWRTLSDGDGISIFGSSHLWIDHNSLSKCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKEMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWDMYAIGGSAEPTINSQGNRFLAPQNAFAKEVTKRVDTDEGVWKSWNWRSEGDLLLNGAFFTSSGAGSGASYARASSLSAKSSSLVGTLTSGAGVLSCQRGSMC 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g0030 418 Pfam Pectate lyase 153 335 IPR002022 -
Acco09g0030 418 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Acco09g0030 418 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Acco09g0030 418 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Acco09g0030 418 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Acco09g0030 418 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Acco09g0030 418 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Acco09g0030 418 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Acco09g0030 418 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Acco09g0030 418 SUPERFAMILY Pectin lyase-like 49 412 IPR011050 -
Acco09g0030 418 FunFam Pectate lyase 69 411 - -
Acco09g0030 418 Gene3D - 69 411 IPR012334 -
Acco09g0030 418 SMART amb_all 144 341 IPR002022 -
Acco09g0030 418 PANTHER PECTATE LYASE 18-RELATED 35 416 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g0030 Acco-ChrAcco09 331617 334946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g0030 42 418 Polysaccharide Lyase AT4G13710 79.576 0.0 663